Question: older version of edger installation
0
gravatar for myprogramming2016
2.4 years ago by
myprogramming20160 wrote:

Hi,

I would like to install edgeR version 3.16.5. I am using following code to install, but getting a warning message. 

Could you please help me?

source("https://bioconductor.org/biocLite.R")
biocLite("edgeRv3.16.5") 

Warning message:
package ‘edgeRv3.16.5’ is not available (for R version 3.3.3) 

 

Thanks

YP

edger • 645 views
ADD COMMENTlink modified 2.4 years ago by James W. MacDonald51k • written 2.4 years ago by myprogramming20160
Answer: older version of edger installation
1
gravatar for James W. MacDonald
2.4 years ago by
United States
James W. MacDonald51k wrote:

Why do you think that would work? Is there something in the help page that made you think you could do that?

If you have R-3.3.3 installed, you should by default get that version of edgeR without having to specify the version (which you can't do anyway).

> version
               _                           
platform       x86_64-pc-linux-gnu         
arch           x86_64                      
os             linux-gnu                   
system         x86_64, linux-gnu           
status                                     
major          3                           
minor          3.1                         
year           2016                        
month          06                          
day            21                          
svn rev        70800                       
language       R                           
version.string R version 3.3.1 (2016-06-21)
nickname       Bug in Your Hair            
> packageDescription("edgeR")$Version
[1] "3.16.5"
>

Note that for Bioconductor R-3.3.1 through R-3.3.3 will give you the same set of packages.

ADD COMMENTlink written 2.4 years ago by James W. MacDonald51k
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