Does anyone know about error message below after blockwiseModule().
> net = blockwiseModules(datExpr, power = 6,
+ TOMType = "unsigned", minModuleSize = 30,
+ reassignThreshold = 0, mergeCutHeight = 0.25,
+ numericLabels = TRUE, pamRespectsDendro = FALSE,
+ saveTOMs = TRUE,
+ saveTOMFileBase = "femaleMouseTOM",
+ verbose = 3)
Calculating module eigengenes block-wise fro
*** caught segfault ***
address 0x0, cause 'memory not mapped'
Traceback:
1: .Call("tomSimilarity_call", selExpr, as.integer(CcorType), as.integer(CnetworkType), as.double(power), as.integer(CTOMType), as.integer(TOMDenomC), as.double(maxPOutliers), as.double(quickCor), as.integer(fallback), as.integer(cosineCorrelation), warn, as.integer(nThreads), as.integer(callVerb), as.integer(callInd), PACKAGE = "WGCNA")
2: blockwiseModules(datExpr, power = 6, TOMType = "unsigned", minModuleSize = 30, reassignThreshold = 0, mergeCutHeight = 0.25, numericLabels = TRUE, pamRespectsDendro = FALSE, saveTOMs = TRUE, saveTOMFileBase = "femaleMouseTOM", verbose = 3)
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Attached the result of sessionInfo()
> sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.4
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics datasets splines utils grDevices methods base
other attached packages:
[1] WGCNA_1.49 fastcluster_1.1.22 dynamicTreeCut_1.63-1 RcmdrMisc_1.0-5 sandwich_2.3-4
[6] car_2.1-4
This seems to be a bug, in the C code. Were you going through the tutorial?