Entering edit mode
I am trying to run the script provided for this package
unfortunately, it gives an error,
I am using windows to run this
data(hyperLOPIT2015)
Warning message:
In data(hyperLOPIT2015) : data set ‘hyperLOPIT2015’ not found
FYI
> sessionInfo() R version 3.4.0 (2017-04-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 Matrix products: default locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252 attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base other attached packages: [1] pRolocGUI_1.10.0 pRoloc_1.16.1 MLInterfaces_1.56.0 cluster_2.0.6 annotate_1.54.0 [6] XML_3.98-1.7 AnnotationDbi_1.38.1 IRanges_2.10.2 S4Vectors_0.14.3 MSnbase_2.2.0 [11] ProtGenerics_1.8.0 BiocParallel_1.10.1 mzR_2.10.0 Rcpp_0.12.11 Biobase_2.36.2 [16] BiocGenerics_0.22.0 BiocInstaller_1.26.0 limma_3.32.2 ggplot2_2.2.1 reshape2_1.4.2 [21] data.table_1.10.4 hash_2.2.6 loaded via a namespace (and not attached): [1] minqa_1.2.4 colorspace_1.3-2 hwriter_1.3.2 class_7.3-14 modeltools_0.2-21 [6] mclust_5.3 pls_2.6-0 base64enc_0.1-3 proxy_0.4-17 hexbin_1.27.1 [11] MatrixModels_0.4-1 affyio_1.46.0 DT_0.2 flexmix_2.3-14 mvtnorm_1.0-6 [16] codetools_0.2-15 splines_3.4.0 doParallel_1.0.10 impute_1.50.1 robustbase_0.92-7 [21] knitr_1.16 jsonlite_1.5 nloptr_1.0.4 caret_6.0-76 pbkrtest_0.4-7 [26] rda_1.0.2-2 kernlab_0.9-25 vsn_3.44.0 sfsmisc_1.1-1 shiny_1.0.3 [31] compiler_3.4.0 sampling_2.8 assertthat_0.2.0 Matrix_1.2-9 lazyeval_0.2.0 [36] htmltools_0.3.6 quantreg_5.33 tools_3.4.0 ggvis_0.4.3 gtable_0.2.0 [41] glue_1.0.0 affy_1.54.0 dplyr_0.7.0 MALDIquant_1.16.2 trimcluster_0.1-2 [46] gdata_2.18.0 preprocessCore_1.38.1 nlme_3.1-131 iterators_1.0.8 fpc_2.1-10 [51] stringr_1.2.0 lme4_1.1-13 lpSolve_5.6.13 mime_0.5 gtools_3.5.0 [56] dendextend_1.5.2 DEoptimR_1.0-8 zlibbioc_1.22.0 MASS_7.3-47 scales_0.4.1 [61] pcaMethods_1.68.0 SparseM_1.77 RColorBrewer_1.1-2 memoise_1.1.0 gridExtra_2.2.1 [66] biomaRt_2.32.1 rpart_4.1-11 stringi_1.1.5 RSQLite_1.1-2 genefilter_1.58.1 [71] randomForest_4.6-12 foreach_1.4.3 e1071_1.6-8 rlang_0.1.1 prabclus_2.2-6 [76] bitops_1.0-6 mzID_1.14.0 lattice_0.20-35 htmlwidgets_0.8 labeling_0.3 [81] gbm_2.1.3 plyr_1.8.4 magrittr_1.5 R6_2.2.1 DBI_0.6-1 [86] whisker_0.3-2 mgcv_1.8-17 survival_2.41-3 RCurl_1.95-4.8 nnet_7.3-12 [91] tibble_1.3.3 car_2.1-4 mlbench_2.1-1 viridis_0.4.0 grid_3.4.0 [96] FNN_1.1 ModelMetrics_1.1.0 threejs_0.2.2 digest_0.6.12 diptest_0.75-7 [101] xtable_1.8-2 httpuv_1.3.3 munsell_0.4.3 viridisLite_0.2.0 >