Question: DEsubs problems with Mus musculus
gravatar for Rtist
18 months ago by
Rtist0 wrote:

Hi everyone,

i used the DEsubs package to find subpathways related to a Mus Musculus RNA-Seq experiment. Using my differentially expressed genes, i get subpathways but when i use the "geneVisualization" function to view the topological measures concerning the genes, in the $measures.topological object the rows names are all NA values instead of getting the entrezid/symbol, the same happens for the graph bars. I encounter this error when using the Mus musculus entrezids. Has anyone encountered this problem?



ADD COMMENTlink written 18 months ago by Rtist0

After encountering a potential error, it would be helpful if you added the output of the function sessionInfo() to your question so we can more easily reproduce the problem.

ADD REPLYlink modified 18 months ago • written 18 months ago by daniel.vantwisk30
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 414 users visited in the last hour