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Question: DEsubs problems with Mus musculus
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gravatar for Rtist
5 months ago by
Rtist0
Rtist0 wrote:

Hi everyone,

i used the DEsubs package to find subpathways related to a Mus Musculus RNA-Seq experiment. Using my differentially expressed genes, i get subpathways but when i use the "geneVisualization" function to view the topological measures concerning the genes, in the $measures.topological object the rows names are all NA values instead of getting the entrezid/symbol, the same happens for the graph bars. I encounter this error when using the Mus musculus entrezids. Has anyone encountered this problem?

Thanks.

 

ADD COMMENTlink written 5 months ago by Rtist0

After encountering a potential error, it would be helpful if you added the output of the function sessionInfo() to your question so we can more easily reproduce the problem.

ADD REPLYlink modified 5 months ago • written 5 months ago by daniel.vantwisk30
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