I would like to use the package "chimeraviz" to visualize fusions.
"chimeraviz allows you to import data from nine different fusion-finders: deFuse, EricScript, InFusion, JAFFA, FusionCatcher, FusionMap, PRADA, SOAPFuse, and STAR-FUSION."
This is information from the "chimeraviz vignette" about how the fusion list is imported
# Load chimeraviz library(chimeraviz) # Load SOAPfuse data if(!exists("soapfuse833ke")) soapfuse833ke <- system.file( "extdata", "soapfuse_833ke_final.Fusion.specific.for.genes", package = "chimeraviz") fusions <- importSoapfuse(soapfuse833ke, "hg38", 10)
I would like to import my own fusion file for visualization but cannot find a way how to import my text file. I would be very grateful for suggestions. Thank you very much!