Trying to read in a gating template causes error
0
0
Entering edit mode
justinyi10 ▴ 10
@justinyi10-13384
Last seen 7.5 years ago

I am trying to read in a gating template I created (.csv) using the following commands, however I am hit with an error.

gtFile<-system.file("/Users/justinyi/Desktop/gating_template.csv",package="openCyto")

gt_tcell<-gatingTemplate(gtFile, verbose = TRUE)
Input contains a \n (or is ""). Taking this to be text input (not a filename)
Input ends before any \r or \n observed. Input will be treated as a single data row.
Positioned on line 1 after skip or autostart
This line is blank. Moving to the next non-blank ... 
Error in fread(x, ...) : 
  Input is either empty or fully whitespace after the skip or autostart. Run again with verbose=TRUE.

How do I resolve this?

opencyto gating bioconductor • 895 views
ADD COMMENT
0
Entering edit mode

I hit the same snag. Any solution?

ADD REPLY

Login before adding your answer.

Traffic: 531 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6