DiffBind: modify overlap without re-counting?
0
0
Entering edit mode
Roger • 0
@roger-12673
Last seen 9 months ago
Netherlands

Hi,

I have a rather large dataset (100+ samples and growing) and I would like to examine the effect of modifying the minimum number of samples where a peak must occur to be included in my DBA object. As far as I understand, one can use the argument minOverlap in dba.count to achieve that, but this forces DiffBind to count the reads again -- which takes a significant amount of time and IO bandwidth. Is there a way to obtain the counts only in peaks with a given overlap without repeating the process?

I know the DBA object retains the raw counts even if they are normalized, which makes me believe that such a feature may exist.

Thanks in advance!

diffbind • 432 views
ADD COMMENT

Login before adding your answer.

Traffic: 223 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6