This is the first time I am posting an issue online, I also posted this on Biostars:
I updated R to the latest version. When I tried to use latest version of affycoretools package an error message told me that I should use an updated version of RSQLite:
"...namespace ‘RSQLite’ 1.1-2 is already loaded, but >= 2.0 is required.."
When I upgraded RSQLite to 2.0 version attaching affycoretools package gives the following error:
library(affycoretools) No methods found in "RSQLite" for requests: dbGetQuery
Trying to upload an annotation package is also problematic:
...No methods found in "RSQLite" for requests: dbGetQuery *** arch - x64 No methods found in "RSQLite" for requests: dbGetQuery * DONE (pd.hg.u133.plus.2)
Thank you very much in advance.