Hi there,

I have generated a results table from DESeq, and the output looks like the way it should, with the baseMean, log2 fold change, and pvalues, except that the rows are numbered rather than named by gene.

I would assume that the genes are listed in the same order that they appeared in the countData, ie I could annotate the results file with gene names by simply assigning it the countData row names.  I hesitate to do this, however, in case some other ordering occurred because this move would entirely destroy the interpretation of the results...

Would love confirmation that the order of the genes remains the same, if anyone knows for certain...

Thanks!