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@835102330-13418
Last seen 6.8 years ago
Soggi regionPlot function gave error when import bigwig file with "percentOfRegion" mode, my codes is as followings,
hipExample <- regionPlot("out.bw",testRanges = genes_gr,format = "bigwig",distanceUp = 0,distanceDown = 0,style = "percentOfRegion")
Importing BigWig.....Done Filtering regions which extend outside of genome boundaries.....Done Filtered 7515 of 33323 regions Splitting regions by Watson and Crick strand....Done ..Done Found 12982 Watson strand regions Found 12826 Crick strand regions Extending regions.....done Making windows. Windowing positive 5' flanking Windowing positive regions Windowing positive 3' flank Windowing negative 5' flank Windowing negative regions Windowing negative 3' flank ..done Calculating bin scores for regions. Processing per contig contig: 1 Processing inner region windows in Chr1 ..done Processing flanking windows in Chr1 contig: 2 Processing inner region windows in Chr2 ..done Processing flanking windows in Chr2 contig: 3 Processing inner region windows in Chr3 ..done Processing flanking windows in Chr3 contig: 4 Processing inner region windows in Chr4 ..done Processing flanking windows in Chr4 Error in FUN(X[[i]], ...) : assay rownames() must be NULL or equal rowData rownames() / rowRanges names()
