untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
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@multipleseqs-13754
Last seen 21 months ago

I would like to use a set of sequences in DNA format (multiple sequence alignment), translate them to AA, align them and then untranslate them back to DNA (aligned). Seems like translate() function in Biostrings does not allow this behaviour.

I appreciate any suggestions or different approaches.

biostrings msa • 705 views
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Please note that more or less exactly the same question has been discussed previously (thread Multiple Sequence Alignment using DNA sequence). And the answer was the same as by hakunamatata: use DECIPHER.

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@multipleseqs-13754
Last seen 21 months ago

use DECIPHER package

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