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Question: untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
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gravatar for hakunamatata
16 months ago by
hakunamatata0 wrote:

I would like to use a set of sequences in DNA format (multiple sequence alignment), translate them to AA, align them and then untranslate them back to DNA (aligned). Seems like translate() function in Biostrings does not allow this behaviour.

I appreciate any suggestions or different approaches.

ADD COMMENTlink modified 16 months ago • written 16 months ago by hakunamatata0

Please note that more or less exactly the same question has been discussed previously (thread Multiple Sequence Alignment using DNA sequence). And the answer was the same as by hakunamatata: use DECIPHER.

ADD REPLYlink modified 16 months ago by Hervé Pagès ♦♦ 13k • written 16 months ago by UBodenhofer250
1
gravatar for hakunamatata
16 months ago by
hakunamatata0 wrote:

use DECIPHER package

ADD COMMENTlink written 16 months ago by hakunamatata0
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