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Question: untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
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gravatar for hakunamatata
3 months ago by
hakunamatata0 wrote:

I would like to use a set of sequences in DNA format (multiple sequence alignment), translate them to AA, align them and then untranslate them back to DNA (aligned). Seems like translate() function in Biostrings does not allow this behaviour.

I appreciate any suggestions or different approaches.

ADD COMMENTlink modified 3 months ago • written 3 months ago by hakunamatata0

Please note that more or less exactly the same question has been discussed previously (thread Multiple Sequence Alignment using DNA sequence). And the answer was the same as by hakunamatata: use DECIPHER.

ADD REPLYlink modified 3 months ago by Hervé Pagès ♦♦ 13k • written 3 months ago by UBodenhofer200
1
gravatar for hakunamatata
3 months ago by
hakunamatata0 wrote:

use DECIPHER package

ADD COMMENTlink written 3 months ago by hakunamatata0
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