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Question: Tximport with paired and single ended reads
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gravatar for chris86
13 months ago by
chris86380
UCL, United Kingdom
chris86380 wrote:

Hi

I am currently running tximport on my RNA-seq salmon count data, unfortunately we have a batch that is single ended reads. Is it appropriate to read all samples in together and then export the normalized counts etc for downstream analysis, or should I do this separately for single and paired reads?

Edit: I looked into how tximport works and I don't think this should matter.

Best wishes,

Chris

ADD COMMENTlink modified 12 months ago • written 13 months ago by chris86380
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