Search
Question: Tximport with paired and single ended reads
0
gravatar for chris86
3 months ago by
chris86330
UCL, United Kingdom
chris86330 wrote:

Hi

I am currently running tximport on my RNA-seq salmon count data, unfortunately we have a batch that is single ended reads. Is it appropriate to read all samples in together and then export the normalized counts etc for downstream analysis, or should I do this separately for single and paired reads?

Edit: I looked into how tximport works and I don't think this should matter.

Best wishes,

Chris

ADD COMMENTlink modified 10 weeks ago • written 3 months ago by chris86330
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 335 users visited in the last hour