Tximport with paired and single ended reads
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chris86 ▴ 400
@chris86-8408
Last seen 3.0 years ago
UCL, United Kingdom

Hi

I am currently running tximport on my RNA-seq salmon count data, unfortunately we have a batch that is single ended reads. Is it appropriate to read all samples in together and then export the normalized counts etc for downstream analysis, or should I do this separately for single and paired reads?

Edit: I looked into how tximport works and I don't think this should matter.

Best wishes,

Chris

limma rna-seq bioconductor • 705 views
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