Difficulties updating a package on Bioconductor
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l.j.sinke • 0
@ljsinke-23637
Last seen 10 months ago

I am trying to push updates to my package on Bioconductor, but even though

I don't see anything. It still says updated before release on the site: http://bioconductor.org/packages/3.12/bioc/html/Omixer.html

Please could you help me understand what I'm missing?

update Omixer maintainer • 248 views
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shepherl 2.8k
@lshep
Last seen 16 minutes ago
United States

Development type questions are best posted to the bioc-devel mailing list.

You did not include a valid version bump on the RELEASE_3_12 branch. The build system will only recognize changes to propagate with a valid version bump; in this case in should be bumped to 1.0.1. Once you push the version bump in the DESCRIPTION you should see the changes.

This is why you see the changes in devel but not release as you properly version bumped on the master branch to 1.1.1.

Hope this helps.

Cheers

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Thank you very much for replying, even in the wrong place for asking!

This is definitely the problem, and I misunderstood the correct version bumping practices! Thank you again.

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Apologies - I now get an Error: Illegal version bump from 1.1.1 to 1.0.1. Since I have already pushed an incorrect version bump to 1.1.1 I cannot revert to the correct version bump (1.0.1). Would you be able to suggest a solution? I will also ask in bioc-devel.

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Please see the documentation on pushing to the release branch. It looks like you are trying to still push to the master branch. You will have to push to RELEASE_3_12

http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/

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