When to Correct for Cell Type Heterogeneity in ChAMP Pipeline

1

Entering edit mode

Gurkenkönig ▴ 10

@gurkenkonig-16328

Last seen 5.8 years ago

When is the right time to correct for different cell counts in whole blood samples on Illumina EPIC Chips when analysing the data with the ChAMP-Pipeline? After Normalization or after Batch Effect Correction? And is the method even working with EPIC data?

microarray • 788 views

ADD COMMENT • link updated 4.0 years ago by Ankit ▴ 20 • written 5.8 years ago by Gurkenkönig ▴ 10

1

Entering edit mode

Hi.

Did you get the solution for correction of blood celll composition for EPIC array data?

I would appreciate any help

Thank you

ADD REPLY • link 4.0 years ago Ankit ▴ 20

Login before adding your answer.

Similar Posts

Loading Similar Posts

Traffic: 544 users visited in the last hour

Content Search
Users
Tags
Badges

Help About
FAQ

Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the

version 2.3.6