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0
votes
1
answer
205
views
1
answer
simpleRNASeq easyRNAseq warnings edgeR error
edger easyrnaseq simplernaseq deformats written 8 months ago by KGies • 0 • updated 7 months ago by Nicolas Delhomme • 320
4
votes
2
answers
338
views
2
answers
Warning: missing reverse strand option in easyRNASeq.
rnaseq easyrnaseq strand written 15 months ago by Michael Dondrup • 10 • updated 15 months ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
580
views
1
answer
simpleRNASeq stopped running (related to S4 vectors?)
easyrnaseq s4vectors simplernaseq written 2.8 years ago by michael.dhar • 0 • updated 2.8 years ago by Nicolas Delhomme • 320
0
votes
2
answers
705
views
2
answers
Package installation errors for Bioconductor and easyRNASeq
biocinstaller easyrnaseq installation written 2.8 years ago by michael.dhar • 0 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
549
views
1
answer
Error reading BAM file with duplicated header in easyRNAseq and GenomicAlignments
easyrnaseq genomicalignments software error bam written 3.0 years ago by Michael Dondrup • 10 • updated 3.0 years ago by Martin Morgan ♦♦ 22k
0
votes
4
answers
674
views
4
answers
easyRNAseq annotation file
annotation easyrnaseq written 3.0 years ago by kylvalda • 0
0
votes
1
answer
885
views
1
answer
Issue with easyRNASeq
easyrnaseq error written 3.2 years ago by ea11g0 • 0
1
vote
5
answers
1.2k
views
5
answers
Several issues with the package easyRNASeq
easyrnaseq bug written 3.2 years ago by Michael Dondrup • 10
0
votes
1
answer
568
views
1
answer
simpleRNASeq error importing BAM files
easyrnaseq simplernaseq written 3.2 years ago by ea11g0 • 0 • updated 3.2 years ago by James W. MacDonald ♦ 47k
0
votes
2
answers
650
views
2
answers
easyRNASeq: "Error in IRangesList"
easyrnaseq written 3.3 years ago by surjray • 0
0
votes
2
answers
862
views
2
answers
count tables created with easyRNASeq and the rpkm() function from edgeR
edger easyrnaseq rpkm written 3.6 years ago by Sylvain Foisy • 30 • updated 3.6 years ago by Nicolas Delhomme • 320
2
votes
4
answers
896
views
4
answers
easyRNAseq says Your annotation is not in sync with your alignments!
easyrnaseq written 3.7 years ago by Mayte • 0 • updated 3.6 years ago by Nicolas Delhomme • 320
0
votes
1
answer
1.4k
views
1
answer
easyRNASeq error: Error in aggregate.data.frame(as.data.frame(x), ...) : no rows to aggregate
easyrnaseq written 3.8 years ago by sylvian • 0
1
vote
2
answers
956
views
2
answers
Getting a count matrix from a SummerizedExpriment with EasyRNASeq
easyrnaseq written 3.9 years ago by Sylvain Foisy • 30
0
votes
1
answer
551
views
1
answer
Devel version of easyRNASeq: using the simpleRNASeq method gives an error
easyrnaseq written 4.5 years ago by Sylvain Foisy • 80 • updated 4.5 years ago by Nicolas Delhomme • 320
0
votes
1
answer
584
views
1
answer
Devel version of easyRNASeq: using the simpleRNASeq method gives an error
annotation easyrnaseq written 4.5 years ago by Nicolas Delhomme • 320 • updated 4.5 years ago by Sylvain Foisy • 80
0
votes
1
answer
522
views
1
answer
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
coverage annotation go cancer organism edger deseq genomicranges rsubread easyrnaseq written 4.8 years ago by Gordon Smyth ♦ 35k • updated 4.8 years ago by Nicolas Delhomme • 320
0
votes
1
answer
821
views
1
answer
Using a countDataSet as input data in DESeq2
easyrnaseq written 4.8 years ago by Guest User • 12k • updated 4.8 years ago by Michael Love ♦ 19k
0
votes
0
answers
581
views
0
answers
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
coverage annotation go cancer organism edger deseq genomicranges easyrnaseq written 4.8 years ago by Nicolas Delhomme • 320
0
votes
2
answers
682
views
2
answers
easyRNAseq and DEseq for no replicate RNAseq
rnaseq process easyrnaseq written 4.8 years ago by Isabelle Stévant • 10 • updated 4.8 years ago by Nicolas Delhomme • 320
0
votes
2
answers
704
views
2
answers
Using easyRNASeq package: question about BAM/BAI and links to them
easyrnaseq written 4.8 years ago by Sylvain Foisy • 80 • updated 4.8 years ago by Sylvain Foisy • 30
0
votes
1
answer
941
views
1
answer
GTF file error when using easyRNAseq�
annotation organism bsgenome deseq easyrnaseq written 4.9 years ago by Guest User • 12k • updated 4.9 years ago by delhomme@embl.de • 1.2k
0
votes
1
answer
573
views
1
answer
eayRNASeq with Ensemble GRCh37 help
annotation organism easyrnaseq deseq2 written 5.0 years ago by Aki Hoji • 10 • updated 5.0 years ago by delhomme@embl.de • 1.2k
0
votes
1
answer
542
views
1
answer
EasyRNAseq - error in building count table - Error in unlist
sequencing rnaseq edger easyrnaseq written 5.0 years ago by Guest User • 12k • updated 5.0 years ago by delhomme@embl.de • 1.2k
0
votes
0
answers
550
views
0
answers
error in "count" for SummarizedExperiment in easyRNASeq
easyrnaseq deseq2 written 5.0 years ago by Lescai, Francesco • 370
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