Popular Question

Created A Question With More Than 1,000 Views

Awarded 7419 times (see all awards). Earned by the following contributors:
Chris • 0
3 weeks ago
United States
The difference when using Limma compare between 3 conditions vs 2 conditions
Maria Doyle ▴ 70
1 month, 1 week ago
Ireland
European Bioconductor Conference 2023 planning
paria.alipour • 0
1 month, 4 weeks ago
Canada
How to calculate p value when comparing two sets of DEGs and not applying interaction
Bine ▴ 40
3 months ago
UK
SingleR annotation of several slots/patients
lwanderson8c • 0
3 months, 2 weeks ago
Brazil
Reading GFF file and pre-processing, run iinfer_syntenet(), input and output
Bine ▴ 40
4 months, 1 week ago
UK
JoinLayers function for Seurat Object for annotation with SingleR
marinaw ▴ 20
4 months, 1 week ago
Canada
Understanding "gene ratio" when using plotEnrich(c())
triZZla • 0
5 months ago
Germany
Timely differentially expressed genes
shepherl 3.8k
5 months, 1 week ago
United States
Nominations for Bioconductor 2022 Awards!
kjngo ▴ 40
5 months, 1 week ago
United States
Questions about using training sets and WGCNA module eigengenes generated separately for Pigengene package
rohitsatyam102 ▴ 20
5 months, 1 week ago
India
sampling random regions of same nucleotide composition from hg38 genome
Jonathan ▴ 10
5 months, 2 weeks ago
United States
Batch correction and repeated measures
Abhishek ▴ 10
5 months, 4 weeks ago
Canada
biomaRt not working - lazy table error
nhaus ▴ 30
6 months ago
Switzerland
getLDS causes "biomaRt has encountered an unexpected server error"
Ankit ▴ 20
6 months, 2 weeks ago
Italy
Blood cell composition adjustment in methylation EPIC array: ChAMP
Weiqian ▴ 10
6 months, 2 weeks ago
United States
Questions about the false positives indicated by DESeq2 and QQ plot
Daniel E. Weeks ▴ 30
6 months, 3 weeks ago
Pittsburgh, Pennsylvania, United States…
Gviz: UcscTrack and "GC Percent" information
Koki ▴ 10
7 months ago
Japan
Speeding up of DelayedArray::write_block()
Dario Strbenac ★ 1.5k
7 months, 1 week ago
Australia
Matching Variants Between Two VCF Objects
shepherl 3.8k
7 months, 1 week ago
United States
List of Deprecated Packages for Bioc3.18
nhaus ▴ 30
8 months, 2 weeks ago
Switzerland
Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
Sara • 0
8 months, 2 weeks ago
Belgium
removing the batch effect for vst counts and defining the batches in removeBatchEffect function
Chris • 0
9 months ago
United States
Help with error DiffBind
Sam ▴ 10
9 months ago
Jerusalem
DiffBind does not use DESeq2 MLE estimation of fold change
rae.alshammari ▴ 10
9 months ago
United States
Warning messages in detecting P-values
chiwut.wong • 0
9 months ago
United States
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Luca • 0
9 months ago
Italy
RNA seq differential expression analysis for large sample size
mohammedtoufiq91 ▴ 10
9 months, 1 week ago
United States
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
maltethodberg ▴ 170
9 months, 3 weeks ago
Denmark
rowsum or similar for RleArray?
Jonathan ▴ 10
9 months, 3 weeks ago
United States
Gene set analysis: GSVA, Z-Score, and fold-changes
Theo ▴ 10
10 months, 1 week ago
Germany
ranking the DeSeq2 results using t-values?
Assa Yeroslaviz ★ 1.5k
10 months, 1 week ago
Germany
scran ScoreMarkers throws a warning
Chris • 0
10 months, 2 weeks ago
United States
Interpret plot from DiffBind
Lluís Revilla Sancho ▴ 730
10 months, 2 weeks ago
European Union
P-value histogram of testLinearModel is not uniform
Maria Doyle ▴ 70
10 months, 3 weeks ago
Ireland
BioC2023 abstract submission is now open!
Michael Steinbaugh ▴ 90
10 months, 3 weeks ago
Cambridge, MA
SummarizedExperiment is now warning on attach about `read_block` namespace conflict
Sabiha ▴ 20
11 months ago
United States
Visualization of negative log CPM values
James W. MacDonald 65k
11 months ago
United States
Installing densvis on a Singularity container
Sabiha ▴ 20
11 months ago
United States
Can we use rlog or vst data values in limma for differential expression analysis?
mohammedtoufiq91 ▴ 10
11 months ago
United States
Question about setting threshold using filtering by expression on genes in edgeR
Bogdan ▴ 670
11 months, 2 weeks ago
Palo Alto, CA, USA
about baseMean in DEseq2
Maria Doyle ▴ 70
11 months, 2 weeks ago
Ireland
Join the Technical Advisory Board
ATpoint ★ 4.0k
11 months, 2 weeks ago
Germany
optimHess problem in apeglm/DESeq2
Michael Steinbaugh ▴ 90
11 months, 2 weeks ago
Cambridge, MA
DESeq2 1.40.0 binary install issue on macOS x86 (Bioconductor 3.17)
Max Bone • 0
11 months, 3 weeks ago
United Kingdom
Unable to load data from duffel.rail
Alexandros • 0
11 months, 4 weeks ago
Belgium
Interprteting the phylogenomic profiles plot
MEME ▴ 10
11 months, 4 weeks ago
Hong Kong
DESeq2 1.40.0 binary install issue on Mac M1 (Bioconductor 3.17)
Weiqian ▴ 10
1 year ago
United States
How many parameters should be included in the model design for deseq2?
urwah ▴ 10
1 year ago
Australia
Unwanted variation observed on PCA for transcript level data
Chris • 0
1 year ago
United States
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
7,419 results • Page 1 of 149
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6