Bioconductor Forum

Marina • 0

1 day ago

For : Comparing between two differential expression analysis - two different fold changes

rina • 0

3 days ago

For : Error: vector memory exhausted (limit reached?)

Kamil Slowikowski • 30

5 days ago

United States

For : Found more than one class

Frederik Ziebell • 10

10 days ago

EMBL Heidelberg

For : DESeq2: Poor dispersion fit, even when a local or custom fit is used

Daniel.Berner@unibas.ch • 90

10 days ago

For : alignment & SNP calling

marongiu.luigi • 0

12 hours ago

European Union

For : Load csf files with read.flowSet()

Yonatan Amzaleg • 0

5 days ago

Los Angeles, CA, University of Southern…

For : DESeq2- preliminary study no replicates

erwan.scaon • 10

8 days ago

For : Contrast for DESeq2 design with interaction and blocking factor

s.munster • 40

9 days ago

USA/Oklahoma City

For : problems filtering antigenomic probes from HTA 2.0

wewolski • 10

5 weeks ago

Zurich

For : Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?

efratsh • 0

7 days ago

For : Unable to install packages

Sophie Marion de Proce • 0

10 days ago

University of Edinburgh

For : Cannot install xps package, Mac OS 10.11, R 3.3

jma1991 • 60

2 days ago

For : Reads mistakenly being assigned to Unassigned_NoFeatures category when using featureCounts

jma1991 • 60

2 days ago

For : Memory-efficient method to calculate GC content of millions of GRanges

hwu12 • 10

19 days ago

For : featureCounts for multiple features

hwu12 • 10

19 days ago

For : Thermo Xcalibur RAW data to MGF

reubenmcgregor88 • 0

4 weeks ago

For : MA plot DiffBind in ggplot2

charles.foster • 100

7 weeks ago

For : WGCNA sample size minimum: why?

alexandr.gopanenko • 20

57 minutes ago

For : Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work

Cale Reid • 10

10 weeks ago

San Francisco, CA

For : Adjusted p-value output from Limma different from output using p.adjust?

L_K • 0

9 weeks ago

For : Age covariate continuous vs. categorical

L_K • 0

9 weeks ago

For : Applying SVA to RNA-Seq dataset

georgia.katsoula • 10

2 days ago

For : ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', 'tbl_lazy', 'tbl')"

ijvechetti • 0

11 weeks ago

For : DESeq2 for multiple groups

Qiang • 70

11 weeks ago

For : Error in parseURI("") : cannot parse URI (rtracklayer package)

Mthabisi Moyo • 30

8 weeks ago

For : ensDbFromGtf error from gtf file downloaded from GENCODE.

ecg1g15 • 0

12 weeks ago

For : Reordering clusters when plotting pheatmap in R

DataFanatic • 0

3 months ago

For : Adjusting batch effects in microarray expression data using empirical Bayes methods

hamza_karakurt • 50

3 months ago

For : Differential Expression Analysis between conditions of single cell RNA-Seq

Tim Peters • 120

3 months ago

Australia

For : Issue with SummarizedExperiment thru DSS::makeBSseqData

ramiro.barrantes • 10

3 months ago

United States

For : DESeq2 results are completely different for the same contrast when considering different designs

maleknias • 0

9 weeks ago

For : NA values of count matrix in class DESeqDataSet

atakanekiz • 30

3 months ago

For : Understanding clusterprofiler enrichment results

Kevin Ushey • 10

3 months ago

United States

For : Recommended way to use BiocInstaller / BiocManager in packages on CRAN?

Miguel.Cosenza • 10

10 weeks ago

Germany / Freiburg / University Medical…

For : Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and maxGSSize arguments

Hesh • 0

3 months ago

University of Washington

For : Analyzing data without replicates using DiffBind

inzirio • 10

3 months ago

For : Error : object path is not exported by namespace:Rsamtools

Hervé Pagès 14k

21 hours ago

Seattle, WA, United States

For : how to obtain base counts from BAM file at specific genomic coordinates

Wei Shi ♦ 3.3k

1 day ago

Australia/Melbourne/Olivia Newton-John …

For : normalization of illumina bead array data

Martin Morgan 25k

1 day ago

United States

For : Error in getClass(Class, where = topenv(parent.frame())) : "AnnotatedDataFrame" is not a defined class

szenitha • 0

4.3 years ago

For : DESeq2: Extremely low pvalues

Srinivas Iyyer • 590

6.5 years ago

For : Limma - Gene set test

Srinivas Iyyer • 590

6.5 years ago

For : How to get ENTREZID from Gene symbol in bioconductor

Srinivas Iyyer • 590

6.5 years ago

For : a question on creating model.matrix using limma

Srinivas Iyyer • 590

6.5 years ago

For : heatmap.2 coloring question

Zhan Tianyu • 40

6.5 years ago

For : The difference between three methods in calcNormFacotors() in edgeR

Pranavathiyani G • 0

3.9 years ago

Puducherry, India

For : Tutorial for RNA-Seq Data Analysis

Shuying • 30

6.5 years ago

For : Error: formal argument "envir" matched by multiple actual arguments

jaro.slamecka • 130

5 weeks ago

Mitchell Cancer Institute, Mobile AL, U…

For : Problem with reading raw Illumina Human HT-12 v4 data using beadarray

boboshaq • 0

2.3 years ago

For : Rhtslib - install error

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