Popular Question

Created A Question With More Than 1,000 Views

Awarded 5061 times (see all awards). Earned by the following contributors:
assaron ▴ 200
3 months, 4 weeks ago
St Petersburg
Change in pathway IDs scheme in reactome.db
jennyl.smith12 • 0
4 months ago
Subread FeatureCounts for Exon level quantification: Length estimate for Exons as low as 1 base-pair
tg369 ▴ 40
4 months, 2 weeks ago
United Kingdom
Sparsity plot and how that indicates a model fit to negative binomial distribution
Benjamin Ostendorf ▴ 90
4 months, 2 weeks ago
United States
Log2FoldChange shrinkage method in DESeq2
MrHodor • 0
4 months, 2 weeks ago
DESeq2 unequal sample sizes
Marina • 0
5 months ago
Comparing between two differential expression analysis - two different fold changes
rina ▴ 20
5 months ago
Toulouse
Error: vector memory exhausted (limit reached?)
Matthew Ritchie ▴ 990
5 months ago
Australia
Join the Bioconductor Community Advisory Board
Kamil Slowikowski ▴ 30
5 months ago
United States
Found more than one class
Frederik Ziebell ▴ 10
5 months, 1 week ago
EMBL Heidelberg
DESeq2: Poor dispersion fit, even when a local or custom fit is used
Daniel.Berner@unibas.ch ▴ 90
5 months, 1 week ago
alignment & SNP calling
marongiu.luigi • 0
5 months, 1 week ago
European Union
Load csf files with read.flowSet()
Yonatan Amzaleg • 0
5 months, 2 weeks ago
Los Angeles, CA, University of Southern…
DESeq2- preliminary study no replicates
erwan.scaon ▴ 10
6 months ago
Contrast for DESeq2 design with interaction and blocking factor
s.munster ▴ 40
6 months ago
USA/Oklahoma City
problems filtering antigenomic probes from HTA 2.0
wewolski ▴ 10
6 months, 1 week ago
Zurich
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
efratsh • 0
6 months, 1 week ago
Unable to install packages
Sophie Marion de Proce • 0
6 months, 2 weeks ago
University of Edinburgh
Cannot install xps package, Mac OS 10.11, R 3.3
jma1991 ▴ 60
6 months, 2 weeks ago
Cumbernauld
Memory-efficient method to calculate GC content of millions of GRanges
jma1991 ▴ 60
6 months, 2 weeks ago
Cumbernauld
Reads mistakenly being assigned to Unassigned_NoFeatures category when using featureCounts
hwu12 ▴ 10
6 months, 2 weeks ago
featureCounts for multiple features
hwu12 ▴ 10
6 months, 2 weeks ago
Thermo Xcalibur RAW data to MGF
reubenmcgregor88 • 0
6 months, 2 weeks ago
MA plot DiffBind in ggplot2
charles.foster ▴ 110
6 months, 3 weeks ago
Australia
WGCNA sample size minimum: why?
alexandr.gopanenko ▴ 20
6 months, 3 weeks ago
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
Cale Reid ▴ 10
7 months, 1 week ago
San Francisco, CA
Adjusted p-value output from Limma different from output using p.adjust?
L_K • 0
7 months, 2 weeks ago
Age covariate continuous vs. categorical
L_K • 0
7 months, 2 weeks ago
Applying SVA to RNA-Seq dataset
georgia.katsoula ▴ 10
7 months, 2 weeks ago
Germany
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', 'tbl_lazy', 'tbl')"
ijvechetti • 0
7 months, 3 weeks ago
United States
DESeq2 for multiple groups
Qiang ▴ 70
7 months, 3 weeks ago
Error in parseURI("") : cannot parse URI (rtracklayer package)
Mthabisi Moyo ▴ 30
7 months, 3 weeks ago
ensDbFromGtf error from gtf file downloaded from GENCODE.
ecg1g15 • 0
8 months ago
Reordering clusters when plotting pheatmap in R
Luo Weijun ★ 1.5k
8 months, 1 week ago
United States
Postdoc and PhD student in Bioinformatics/Biostatistics
DataFanatic • 0
8 months, 2 weeks ago
Adjusting batch effects in microarray expression data using empirical Bayes methods
hamza_karakurt ▴ 50
8 months, 3 weeks ago
Differential Expression Analysis between conditions of single cell RNA-Seq
Tim Peters ▴ 120
8 months, 3 weeks ago
Australia
Issue with SummarizedExperiment thru DSS::makeBSseqData
ramiro.barrantes ▴ 10
8 months, 3 weeks ago
United States
DESeq2 results are completely different for the same contrast when considering different designs
maleknias • 0
8 months, 3 weeks ago
NA values of count matrix in class DESeqDataSet
atakanekiz ▴ 30
8 months, 3 weeks ago
Understanding clusterprofiler enrichment results
Kevin Ushey ▴ 120
8 months, 4 weeks ago
United States
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
Gordon Smyth 43k
9 months ago
WEHI, Melbourne, Australia
Adjusting removeBatchEffect from limma
Miguel.Cosenza ▴ 10
9 months ago
Germany / Freiburg / University Medical…
Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and maxGSSize arguments
Hesh • 0
9 months ago
University of Washington
Analyzing data without replicates using DiffBind
inzirio ▴ 10
9 months, 1 week ago
Error : object path is not exported by namespace:Rsamtools
shepherl 2.8k
1 year, 1 month ago
United States
Bioc2020 - Call for BOF/HAK/FAQ Sections
shepherl 2.8k
1 year, 1 month ago
United States
Nominations for Bioconductor Awards!
rproendo • 0
1 year, 6 months ago
United States
Unable to install, update WGCNA and GO.db
Gordon Smyth 43k
1 year, 7 months ago
WEHI, Melbourne, Australia
Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
james.dalgleish ▴ 30
1 year, 9 months ago
United States
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
5,061 results • Page 1 of 102
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6