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assaron ▴ 190
1 month ago
St Petersburg
Change in pathway IDs scheme in reactome.db
jennyl.smith12 • 0
1 month, 1 week ago
Subread FeatureCounts for Exon level quantification: Length estimate for Exons as low as 1 base-pair
tg369 ▴ 40
1 month, 3 weeks ago
United Kingdom
Sparsity plot and how that indicates a model fit to negative binomial distribution
Benjamin Ostendorf ▴ 90
1 month, 3 weeks ago
United States
Log2FoldChange shrinkage method in DESeq2
MrHodor • 0
1 month, 3 weeks ago
DESeq2 unequal sample sizes
Marina • 0
2 months, 1 week ago
Comparing between two differential expression analysis - two different fold changes
rina • 0
2 months, 1 week ago
Toulouse
Error: vector memory exhausted (limit reached?)
Matthew Ritchie ▴ 990
2 months, 1 week ago
Australia
Join the Bioconductor Community Advisory Board
Kamil Slowikowski ▴ 30
2 months, 1 week ago
United States
Found more than one class
Frederik Ziebell ▴ 10
2 months, 2 weeks ago
EMBL Heidelberg
DESeq2: Poor dispersion fit, even when a local or custom fit is used
Daniel.Berner@unibas.ch ▴ 90
2 months, 2 weeks ago
alignment & SNP calling
marongiu.luigi • 0
2 months, 2 weeks ago
European Union
Load csf files with read.flowSet()
Yonatan Amzaleg • 0
2 months, 3 weeks ago
Los Angeles, CA, University of Southern…
DESeq2- preliminary study no replicates
erwan.scaon ▴ 10
3 months, 1 week ago
Contrast for DESeq2 design with interaction and blocking factor
s.munster ▴ 40
3 months, 1 week ago
USA/Oklahoma City
problems filtering antigenomic probes from HTA 2.0
wewolski ▴ 10
3 months, 2 weeks ago
Zurich
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
efratsh • 0
3 months, 2 weeks ago
Unable to install packages
Sophie Marion de Proce • 0
3 months, 3 weeks ago
University of Edinburgh
Cannot install xps package, Mac OS 10.11, R 3.3
jma1991 ▴ 60
3 months, 3 weeks ago
Cumbernauld
Memory-efficient method to calculate GC content of millions of GRanges
jma1991 ▴ 60
3 months, 3 weeks ago
Cumbernauld
Reads mistakenly being assigned to Unassigned_NoFeatures category when using featureCounts
hwu12 ▴ 10
3 months, 3 weeks ago
featureCounts for multiple features
hwu12 ▴ 10
3 months, 3 weeks ago
Thermo Xcalibur RAW data to MGF
reubenmcgregor88 • 0
3 months, 3 weeks ago
MA plot DiffBind in ggplot2
charles.foster ▴ 100
3 months, 4 weeks ago
Australia
WGCNA sample size minimum: why?
alexandr.gopanenko ▴ 20
4 months ago
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
Cale Reid ▴ 10
4 months, 2 weeks ago
San Francisco, CA
Adjusted p-value output from Limma different from output using p.adjust?
L_K • 0
4 months, 3 weeks ago
Age covariate continuous vs. categorical
L_K • 0
4 months, 3 weeks ago
Applying SVA to RNA-Seq dataset
georgia.katsoula ▴ 10
4 months, 3 weeks ago
Germany
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', 'tbl_lazy', 'tbl')"
ijvechetti • 0
4 months, 4 weeks ago
DESeq2 for multiple groups
Qiang ▴ 70
4 months, 4 weeks ago
Error in parseURI("") : cannot parse URI (rtracklayer package)
Mthabisi Moyo ▴ 30
5 months ago
ensDbFromGtf error from gtf file downloaded from GENCODE.
ecg1g15 • 0
5 months, 1 week ago
Reordering clusters when plotting pheatmap in R
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5 months, 1 week ago
United States
Postdoc and PhD student in Bioinformatics/Biostatistics
DataFanatic • 0
5 months, 3 weeks ago
Adjusting batch effects in microarray expression data using empirical Bayes methods
hamza_karakurt ▴ 50
5 months, 3 weeks ago
Differential Expression Analysis between conditions of single cell RNA-Seq
Tim Peters ▴ 120
5 months, 4 weeks ago
Australia
Issue with SummarizedExperiment thru DSS::makeBSseqData
ramiro.barrantes ▴ 10
6 months ago
United States
DESeq2 results are completely different for the same contrast when considering different designs
maleknias • 0
6 months ago
NA values of count matrix in class DESeqDataSet
atakanekiz ▴ 30
6 months ago
Understanding clusterprofiler enrichment results
Kevin Ushey ▴ 110
6 months ago
United States
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
Gordon Smyth 42k
6 months, 1 week ago
WEHI, Melbourne, Australia
Adjusting removeBatchEffect from limma
Miguel.Cosenza ▴ 10
6 months, 1 week ago
Germany / Freiburg / University Medical…
Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and maxGSSize arguments
Hesh • 0
6 months, 1 week ago
University of Washington
Analyzing data without replicates using DiffBind
inzirio ▴ 10
6 months, 2 weeks ago
Error : object path is not exported by namespace:Rsamtools
shepherl 2.6k
10 months, 2 weeks ago
United States
Bioc2020 - Call for BOF/HAK/FAQ Sections
shepherl 2.6k
11 months, 1 week ago
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Nominations for Bioconductor Awards!
Gordon Smyth 42k
1 year, 4 months ago
WEHI, Melbourne, Australia
Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
Laurent Gatto 1.5k
1 year, 7 months ago
Belgium
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
Martin Morgan 25k
1 year, 8 months ago
United States
Error in getClass(Class, where = topenv(parent.frame())) : "AnnotatedDataFrame" is not a defined class
4,874 results • Page 1 of 98
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