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8 days ago Sukrit • 0
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How to obtain log2 intensity per sample in DEP?
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8 days ago hele7 ▴ 20
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Error in 1D DelayedArray, when the spacings is larger than 1
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How to calculate high and low tumor mutational burden
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Query regarding WGCNA module formation
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14 days ago moria.robinson • 0
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16 days ago H. Z. Amini • 0
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GEOquery
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1,000 results • Page 1 of 20
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Answer: DESeq2 for allele-specific expression with contrasts between conditions by Michael Love 33k
There is a section in the vignette on interactions that will help you here. You want to test for within-individual effects (`allele`) and c…
Answer: Issues with Tximport by Michael Love 33k
Your file has no version numbers, while your `tx2gene` does have version numbers. While the names look similar, they are not a match. tximp…
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w by Michael Love 33k
This is fine and ignorable, it is coming from upstream packages: our use of a TxDb object to pull out transcript to gene mappings.
Comment: DESeq2: NA's in mcols(object)$betaConv by Michael Love 33k
They are actually rounded to zero in the `dds` which requires integer values.
Comment: Reading multiple data segments from FCS 3.0 file by Prashant • 0
If I would like to automate this in a function, is there any way or function that can figure out `ndataset` from the .fcs file directly? I …
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Comment: DESeq2: NA's in mcols(object)$betaConv
Answer: Using tximeta::summarizeToGene function; Warning message: call dbDisconnect() w
simultaneous use of robust and weighting methods in limma
simultaneous use of robust and weighting methods in limma
Answer: RUVSeq and Salmon
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