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Comment:
Comment: Issue loading and downloading Bioconductor 3.22 packages after update
6 days ago
ATpoint
★ 5.0k
1
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0
replies
195
views
Answer:
Answer: Subsetting data verses contrasts [DESeq2]?
19 days ago
ATpoint
★ 5.0k
0
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0
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228
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Comment:
Comment: Bile acid analysis with limpa
5 weeks ago
ATpoint
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0
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1
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396
views
Answer:
Answer: Are individual-mouse-based statistics possible in CellChat?
5 weeks ago
ATpoint
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0
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0
replies
362
views
Answer:
Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
5 weeks ago
ATpoint
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0
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0
replies
313
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Comment:
Comment: Incosistencies in buildSNNGraph() function
7 weeks ago
ATpoint
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0
votes
1
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361
views
Answer:
Answer: wgcna module preseravtion taking too long?
9 weeks ago
ATpoint
★ 5.0k
0
votes
1
reply
494
views
Answer:
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
10 weeks ago
ATpoint
★ 5.0k
0
votes
0
replies
287
views
Answer:
Answer: Question about DESeq2 Design for Paired Treatment Study
3 months ago
ATpoint
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1
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1
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1.2k
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Comment:
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
3 months ago
ATpoint
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1
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0
replies
1.2k
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Comment:
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
3 months ago
ATpoint
★ 5.0k
0
votes
0
replies
641
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Answer:
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
3 months ago
ATpoint
★ 5.0k
0
votes
0
replies
323
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Comment:
Comment: Using DESeq2 for age prediction
4 months ago
ATpoint
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0
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1
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323
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Answer:
Answer: Using DESeq2 for age prediction
4 months ago
ATpoint
★ 5.0k
1
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0
replies
585
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Comment:
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
5 months ago
ATpoint
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0
votes
1
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569
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Answer:
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
5 months ago
ATpoint
★ 5.0k
1
vote
1
reply
563
views
Answer:
Answer: Error Loading Experiment from SimBenchData Package
5 months ago
ATpoint
★ 5.0k
0
votes
0
replies
410
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Comment:
Comment: replace cat with message in glmTreat when lfc = 0
5 months ago
ATpoint
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0
votes
0
replies
552
views
Answer:
Answer: readDNAStringSet with non DNA characters
5 months ago
ATpoint
★ 5.0k
1
vote
0
replies
2.6k
views
Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago
ATpoint
★ 5.0k
0
votes
1
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14k
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Comment:
Comment: Can NanoString data be analyzed using DESeq2?
6 months ago
ATpoint
★ 5.0k
0
votes
2
replies
2.6k
views
Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago
ATpoint
★ 5.0k
0
votes
1
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2.6k
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Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago
ATpoint
★ 5.0k
0
votes
1
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859
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Comment:
Comment: Are voomByGroup and voomLmFit compatible?
6 months ago
ATpoint
★ 5.0k
0
votes
1
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2.6k
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Comment:
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago
ATpoint
★ 5.0k
0
votes
0
replies
609
views
Comment:
Comment: Differential expression on the transcript-level
7 months ago
ATpoint
★ 5.0k
1
vote
2
replies
5.9k
views
Comment:
Comment: competitive enrichment test yields too few significant results, self-contained t
7 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.2k
views
Comment:
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
7 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.2k
views
Comment:
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
7 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.2k
views
Comment:
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
7 months ago
ATpoint
★ 5.0k
1
vote
1
reply
5.9k
views
Comment:
Comment: competitive enrichment test yields too few significant results, self-contained t
7 months ago
ATpoint
★ 5.0k
0
votes
0
replies
2.5k
views
Answer:
Answer: Regarding the issue of background genes in enrichment analysis
7 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.1k
views
Answer:
Answer: gene detection across experiments
8 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.2k
views
Answer:
Answer: Starting with a clean bioconductor rstudio container
8 months ago
ATpoint
★ 5.0k
0
votes
0
replies
642
views
Answer:
Answer: Problem in Chip-seq data analysis using MACS3
8 months ago
ATpoint
★ 5.0k
1
vote
0
replies
2.8k
views
Answer:
Answer: Deseq2 paired sample in the design is considered as "batch"?
9 months ago
ATpoint
★ 5.0k
1
vote
0
replies
1.6k
views
Answer:
Answer: Biological replicates consideration in DESeq2 design formula.
9 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.4k
views
Answer:
Answer: Heatmap of the Count Matrix
9 months ago
ATpoint
★ 5.0k
0
votes
0
replies
695
views
Answer:
Answer: DESeq2 results
9 months ago
ATpoint
★ 5.0k
0
votes
0
replies
6.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
9 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.7k
views
Comment:
Comment: ERCC Spike-In controls being discarded during Tximeta process:
9 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.7k
views
Comment:
Comment: ERCC Spike-In controls being discarded during Tximeta process:
9 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.2k
views
Comment:
Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
9 months ago
ATpoint
★ 5.0k
0
votes
0
replies
660
views
Answer:
Answer: Best tximport quant.genes.sf
9 months ago
ATpoint
★ 5.0k
0
votes
2
replies
6.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
9 months ago
ATpoint
★ 5.0k
0
votes
2
replies
6.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
10 months ago
ATpoint
★ 5.0k
0
votes
2
replies
6.9k
views
Comment:
Comment: How to load scRNA-seq data from GEO
10 months ago
ATpoint
★ 5.0k
0
votes
1
reply
928
views
Comment:
Comment: FlowSOM is unable to create Output
10 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.9k
views
Comment:
Comment: Discrepancies in normalised count data vs unnormalised
10 months ago
ATpoint
★ 5.0k
0
votes
1
reply
825
views
Answer:
Answer: Design formula for circadian time-course data for vst() function
10 months ago
ATpoint
★ 5.0k
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