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318
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Comment: Comment: Issue loading and downloading Bioconductor 3.22 packages after update
6 days ago ATpoint ★ 5.0k
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195
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Answer: Answer: Subsetting data verses contrasts [DESeq2]?
19 days ago ATpoint ★ 5.0k
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228
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Comment: Comment: Bile acid analysis with limpa
5 weeks ago ATpoint ★ 5.0k
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396
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Answer: Answer: Are individual-mouse-based statistics possible in CellChat?
5 weeks ago ATpoint ★ 5.0k
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362
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Answer: Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
5 weeks ago ATpoint ★ 5.0k
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313
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Comment: Comment: Incosistencies in buildSNNGraph() function
7 weeks ago ATpoint ★ 5.0k
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361
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Answer: Answer: wgcna module preseravtion taking too long?
9 weeks ago ATpoint ★ 5.0k
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494
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Answer: Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
10 weeks ago ATpoint ★ 5.0k
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287
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Answer: Answer: Question about DESeq2 Design for Paired Treatment Study
3 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
3 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
3 months ago ATpoint ★ 5.0k
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641
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Answer: Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
3 months ago ATpoint ★ 5.0k
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323
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Comment: Comment: Using DESeq2 for age prediction
4 months ago ATpoint ★ 5.0k
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323
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Answer: Answer: Using DESeq2 for age prediction
4 months ago ATpoint ★ 5.0k
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585
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Comment: Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
5 months ago ATpoint ★ 5.0k
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569
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Answer: Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
5 months ago ATpoint ★ 5.0k
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563
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Answer: Answer: Error Loading Experiment from SimBenchData Package
5 months ago ATpoint ★ 5.0k
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410
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Comment: Comment: replace cat with message in glmTreat when lfc = 0
5 months ago ATpoint ★ 5.0k
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552
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Answer: Answer: readDNAStringSet with non DNA characters
5 months ago ATpoint ★ 5.0k
1
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2.6k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago ATpoint ★ 5.0k
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14k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
6 months ago ATpoint ★ 5.0k
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2
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2.6k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago ATpoint ★ 5.0k
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1
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2.6k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago ATpoint ★ 5.0k
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1
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859
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
6 months ago ATpoint ★ 5.0k
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2.6k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago ATpoint ★ 5.0k
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609
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Comment: Comment: Differential expression on the transcript-level
7 months ago ATpoint ★ 5.0k
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2
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5.9k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
7 months ago ATpoint ★ 5.0k
1
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1
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2.2k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
7 months ago ATpoint ★ 5.0k
1
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1
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2.2k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
7 months ago ATpoint ★ 5.0k
1
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1
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2.2k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
7 months ago ATpoint ★ 5.0k
1
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1
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5.9k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
7 months ago ATpoint ★ 5.0k
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2.5k
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Answer: Answer: Regarding the issue of background genes in enrichment analysis
7 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: gene detection across experiments
8 months ago ATpoint ★ 5.0k
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1.2k
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Answer: Answer: Starting with a clean bioconductor rstudio container
8 months ago ATpoint ★ 5.0k
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642
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Answer: Answer: Problem in Chip-seq data analysis using MACS3
8 months ago ATpoint ★ 5.0k
1
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2.8k
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Answer: Answer: Deseq2 paired sample in the design is considered as "batch"?
9 months ago ATpoint ★ 5.0k
1
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1.6k
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Answer: Answer: Biological replicates consideration in DESeq2 design formula.
9 months ago ATpoint ★ 5.0k
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1
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2.4k
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Answer: Answer: Heatmap of the Count Matrix
9 months ago ATpoint ★ 5.0k
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695
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Answer: Answer: DESeq2 results
9 months ago ATpoint ★ 5.0k
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
9 months ago ATpoint ★ 5.0k
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1
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1.7k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
9 months ago ATpoint ★ 5.0k
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1
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1.7k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
9 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
9 months ago ATpoint ★ 5.0k
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660
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Answer: Answer: Best tximport quant.genes.sf
9 months ago ATpoint ★ 5.0k
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2
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
9 months ago ATpoint ★ 5.0k
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2
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
10 months ago ATpoint ★ 5.0k
0
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2
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
10 months ago ATpoint ★ 5.0k
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1
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928
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Comment: Comment: FlowSOM is unable to create Output
10 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Discrepancies in normalised count data vs unnormalised
10 months ago ATpoint ★ 5.0k
0
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1
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825
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Answer: Answer: Design formula for circadian time-course data for vst() function
10 months ago ATpoint ★ 5.0k
1,108 results • Page 1 of 23
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