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Answer: Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
2 days ago ATpoint ★ 5.0k
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222
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Comment: Comment: Using DESeq2 for age prediction
19 days ago ATpoint ★ 5.0k
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222
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Answer: Answer: Using DESeq2 for age prediction
21 days ago ATpoint ★ 5.0k
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392
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Comment: Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
6 weeks ago ATpoint ★ 5.0k
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394
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Answer: Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
6 weeks ago ATpoint ★ 5.0k
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315
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Answer: Answer: Error Loading Experiment from SimBenchData Package
6 weeks ago ATpoint ★ 5.0k
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Comment: Comment: replace cat with message in glmTreat when lfc = 0
8 weeks ago ATpoint ★ 5.0k
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392
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Answer: Answer: readDNAStringSet with non DNA characters
8 weeks ago ATpoint ★ 5.0k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
12 weeks ago ATpoint ★ 5.0k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
12 weeks ago ATpoint ★ 5.0k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
12 weeks ago ATpoint ★ 5.0k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
12 weeks ago ATpoint ★ 5.0k
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
12 weeks ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
12 weeks ago ATpoint ★ 5.0k
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394
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Comment: Comment: Differential expression on the transcript-level
3 months ago ATpoint ★ 5.0k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
4 months ago ATpoint ★ 5.0k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
4 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
4 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
4 months ago ATpoint ★ 5.0k
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5.6k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
4 months ago ATpoint ★ 5.0k
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2.3k
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Answer: Answer: Regarding the issue of background genes in enrichment analysis
4 months ago ATpoint ★ 5.0k
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964
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Answer: Answer: gene detection across experiments
4 months ago ATpoint ★ 5.0k
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Answer: Answer: Starting with a clean bioconductor rstudio container
4 months ago ATpoint ★ 5.0k
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Answer: Answer: Problem in Chip-seq data analysis using MACS3
4 months ago ATpoint ★ 5.0k
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Answer: Answer: Deseq2 paired sample in the design is considered as "batch"?
5 months ago ATpoint ★ 5.0k
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1.4k
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Answer: Answer: Biological replicates consideration in DESeq2 design formula.
5 months ago ATpoint ★ 5.0k
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Answer: Answer: Heatmap of the Count Matrix
5 months ago ATpoint ★ 5.0k
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576
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Answer: Answer: DESeq2 results
5 months ago ATpoint ★ 5.0k
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5.7k
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Comment: Comment: How to load scRNA-seq data from GEO
5 months ago ATpoint ★ 5.0k
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1.5k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
5 months ago ATpoint ★ 5.0k
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1.5k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
5 months ago ATpoint ★ 5.0k
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Comment: Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
5 months ago ATpoint ★ 5.0k
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449
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Answer: Answer: Best tximport quant.genes.sf
6 months ago ATpoint ★ 5.0k
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Comment: Comment: How to load scRNA-seq data from GEO
6 months ago ATpoint ★ 5.0k
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5.7k
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Comment: Comment: How to load scRNA-seq data from GEO
6 months ago ATpoint ★ 5.0k
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5.7k
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Comment: Comment: How to load scRNA-seq data from GEO
6 months ago ATpoint ★ 5.0k
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640
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Comment: Comment: FlowSOM is unable to create Output
6 months ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: Discrepancies in normalised count data vs unnormalised
6 months ago ATpoint ★ 5.0k
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680
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Answer: Answer: Design formula for circadian time-course data for vst() function
6 months ago ATpoint ★ 5.0k
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17k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
6 months ago ATpoint ★ 5.0k
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3.3k
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Comment: Comment: Check removeBatchEffect effectiveness
6 months ago ATpoint ★ 5.0k
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2
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2.6k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
6 months ago ATpoint ★ 5.0k
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1.0k
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Answer: Answer: Log2foldchange strange behavior
7 months ago ATpoint ★ 5.0k
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1.0k
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Comment: Comment: Log2foldchange strange behavior
7 months ago ATpoint ★ 5.0k
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889
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Answer: Answer: WGCNA
7 months ago ATpoint ★ 5.0k
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1.3k
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Comment: Comment: Differential expression analysis using two TCGA datasets
7 months ago ATpoint ★ 5.0k
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1.3k
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Answer: Answer: PhD scholar
7 months ago ATpoint ★ 5.0k
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2.7k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
7 months ago ATpoint ★ 5.0k
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Answer: Answer: Origin of the labels for the SingleCellMultiModal dataset
7 months ago ATpoint ★ 5.0k
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2
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2.7k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
7 months ago ATpoint ★ 5.0k
1,097 results • Page 1 of 22
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