Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
613
views
Answer: Answer: Log2foldchange strange behavior
1 day ago ATpoint ★ 4.8k
0
votes
1
reply
613
views
Comment: Comment: Log2foldchange strange behavior
1 day ago ATpoint ★ 4.8k
0
votes
0
replies
489
views
Answer: Answer: WGCNA
3 days ago ATpoint ★ 4.8k
0
votes
0
replies
686
views
Comment: Comment: Differential expression analysis using two TCGA datasets
4 days ago ATpoint ★ 4.8k
1
vote
0
replies
822
views
Answer: Answer: PhD scholar
4 days ago ATpoint ★ 4.8k
0
votes
1
reply
2.2k
views
Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
5 days ago ATpoint ★ 4.8k
1
vote
0
replies
1.0k
views
Answer: Answer: Origin of the labels for the SingleCellMultiModal dataset
7 days ago ATpoint ★ 4.8k
0
votes
2
replies
2.2k
views
Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
7 days ago ATpoint ★ 4.8k
0
votes
0
replies
276
views
Comment: Comment: DiffBind can't find a DAR
8 days ago ATpoint ★ 4.8k
0
votes
1
reply
2.5k
views
Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
8 days ago ATpoint ★ 4.8k
1
vote
2
replies
738
views
Comment: Comment: DESeq - help with pair wise comparisons
8 days ago ATpoint ★ 4.8k
0
votes
1
reply
2.5k
views
Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
8 days ago ATpoint ★ 4.8k
0
votes
1
reply
2.5k
views
Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
8 days ago ATpoint ★ 4.8k
0
votes
1
reply
2.5k
views
Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
11 days ago ATpoint ★ 4.8k
0
votes
0
replies
538
views
Answer: Answer: DESeq2
16 days ago ATpoint ★ 4.8k
1
vote
0
replies
757
views
Comment: Comment: ComBat with repeated measures
18 days ago ATpoint ★ 4.8k
0
votes
0
replies
1.2k
views
Comment: Comment: Surprising behavior for DEXseq dispersion estimate plot?
18 days ago ATpoint ★ 4.8k
0
votes
0
replies
1.2k
views
Comment: Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
20 days ago ATpoint ★ 4.8k
2
votes
1
reply
673
views
Answer: Answer: Explannation for ROAST results
21 days ago ATpoint ★ 4.8k
1
vote
0
replies
1.3k
views
Comment: Comment: Using TPM from tximport of Salmon output for singscore
27 days ago ATpoint ★ 4.8k
0
votes
0
replies
526
views
Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
28 days ago ATpoint ★ 4.8k
0
votes
1
reply
308
views
Comment: Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
28 days ago ATpoint ★ 4.8k
0
votes
0
replies
410
views
Answer: Answer: affy::rma results doesn't match with ncbi website
29 days ago ATpoint ★ 4.8k
1
vote
2
replies
2.2k
views
Answer: Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
4 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
443
views
Comment: Comment: Removing UTR from GTF for gene quantification
5 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
534
views
Comment: Comment: Using tximport for kallisto aligned recount2 data
5 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
653
views
Comment: Comment: how many significant figures are there in DESeq2 output
6 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
1.1k
views
Comment: Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
6 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
653
views
Answer: Answer: how many significant figures are there in DESeq2 output
6 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
834
views
Answer: Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
6 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
1.1k
views
Answer: Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
6 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
1.0k
views
Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
6 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
313
views
Answer: Answer: DEseq2 design for additive treatment
7 weeks ago ATpoint ★ 4.8k
2
votes
1
reply
581
views
Answer: Answer: Plot title for PCA in DESeq2
7 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
669
views
Answer: Answer: Automatically install dependencies
8 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
1.1k
views
Comment: Comment: Weird p-values using DESeq2?
8 weeks ago ATpoint ★ 4.8k
1
vote
0
replies
1.1k
views
Comment: Comment: Overcoming confounding in batch effect correction
8 weeks ago ATpoint ★ 4.8k
1
vote
2
replies
1.1k
views
Comment: Comment: Overcoming confounding in batch effect correction
8 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
425
views
Answer: Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi
9 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
199
views
Answer: Answer: Error: lexical error: invalid char in json text (alevin-seurat)
9 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
408
views
Answer: Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
10 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
1.0k
views
Comment: Comment: Why select top highly expressed genes based on normalized counts, but then plot
11 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
1.0k
views
Answer: Answer: Why select top highly expressed genes based on normalized counts, but then plot
11 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
463
views
Comment: Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
11 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
241
views
Answer: Answer: WGCNA sample-data preprocessing order
11 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
260
views
Answer: Answer: WGCNA: Can we use high power (26) for signed network?
11 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
157
views
Answer: Answer: Ph.D. scholar
11 weeks ago ATpoint ★ 4.8k
0
votes
0
replies
608
views
Comment: Comment: EdgeR Biological CVs
12 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
617
views
Answer: Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
12 weeks ago ATpoint ★ 4.8k
0
votes
1
reply
1.0k
views
Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
3 months ago ATpoint ★ 4.8k
1,055 results • Page 1 of 22
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6