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138
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Answer: Answer: wgcna module preseravtion taking too long?
9 days ago ATpoint ★ 5.0k
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192
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Answer: Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
10 days ago ATpoint ★ 5.0k
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181
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Answer: Answer: Question about DESeq2 Design for Paired Treatment Study
4 weeks ago ATpoint ★ 5.0k
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950
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Comment: Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
5 weeks ago ATpoint ★ 5.0k
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950
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Comment: Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
6 weeks ago ATpoint ★ 5.0k
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236
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Answer: Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C
7 weeks ago ATpoint ★ 5.0k
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269
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Comment: Comment: Using DESeq2 for age prediction
9 weeks ago ATpoint ★ 5.0k
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269
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Answer: Answer: Using DESeq2 for age prediction
9 weeks ago ATpoint ★ 5.0k
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462
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Comment: Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
3 months ago ATpoint ★ 5.0k
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455
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Answer: Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
3 months ago ATpoint ★ 5.0k
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1
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366
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Answer: Answer: Error Loading Experiment from SimBenchData Package
3 months ago ATpoint ★ 5.0k
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326
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Comment: Comment: replace cat with message in glmTreat when lfc = 0
3 months ago ATpoint ★ 5.0k
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445
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Answer: Answer: readDNAStringSet with non DNA characters
3 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago ATpoint ★ 5.0k
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1
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
4 months ago ATpoint ★ 5.0k
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2
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1.9k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago ATpoint ★ 5.0k
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1
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1.9k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago ATpoint ★ 5.0k
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1
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776
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Comment: Comment: Are voomByGroup and voomLmFit compatible?
4 months ago ATpoint ★ 5.0k
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1
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1.9k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
4 months ago ATpoint ★ 5.0k
0
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0
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439
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Comment: Comment: Differential expression on the transcript-level
5 months ago ATpoint ★ 5.0k
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2
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5.7k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
5 months ago ATpoint ★ 5.0k
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1
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2.0k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
5 months ago ATpoint ★ 5.0k
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1
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2.0k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
5 months ago ATpoint ★ 5.0k
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1
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2.0k
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Comment: Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
5 months ago ATpoint ★ 5.0k
1
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1
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5.7k
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Comment: Comment: competitive enrichment test yields too few significant results, self-contained t
5 months ago ATpoint ★ 5.0k
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0
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2.4k
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Answer: Answer: Regarding the issue of background genes in enrichment analysis
5 months ago ATpoint ★ 5.0k
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1.0k
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Answer: Answer: gene detection across experiments
6 months ago ATpoint ★ 5.0k
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0
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1.1k
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Answer: Answer: Starting with a clean bioconductor rstudio container
6 months ago ATpoint ★ 5.0k
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0
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586
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Answer: Answer: Problem in Chip-seq data analysis using MACS3
6 months ago ATpoint ★ 5.0k
1
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0
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2.7k
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Answer: Answer: Deseq2 paired sample in the design is considered as "batch"?
7 months ago ATpoint ★ 5.0k
1
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0
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1.5k
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Answer: Answer: Biological replicates consideration in DESeq2 design formula.
7 months ago ATpoint ★ 5.0k
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1
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2.3k
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Answer: Answer: Heatmap of the Count Matrix
7 months ago ATpoint ★ 5.0k
0
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0
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629
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Answer: Answer: DESeq2 results
7 months ago ATpoint ★ 5.0k
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0
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5.9k
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Comment: Comment: How to load scRNA-seq data from GEO
7 months ago ATpoint ★ 5.0k
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1
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1.6k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago ATpoint ★ 5.0k
0
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1
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1.6k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago ATpoint ★ 5.0k
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0
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1.1k
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Comment: Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
7 months ago ATpoint ★ 5.0k
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0
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490
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Answer: Answer: Best tximport quant.genes.sf
7 months ago ATpoint ★ 5.0k
0
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2
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5.9k
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Comment: Comment: How to load scRNA-seq data from GEO
7 months ago ATpoint ★ 5.0k
0
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2
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5.9k
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Comment: Comment: How to load scRNA-seq data from GEO
8 months ago ATpoint ★ 5.0k
0
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2
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5.9k
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Comment: Comment: How to load scRNA-seq data from GEO
8 months ago ATpoint ★ 5.0k
0
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1
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738
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Comment: Comment: FlowSOM is unable to create Output
8 months ago ATpoint ★ 5.0k
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1
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1.8k
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Comment: Comment: Discrepancies in normalised count data vs unnormalised
8 months ago ATpoint ★ 5.0k
0
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1
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756
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Answer: Answer: Design formula for circadian time-course data for vst() function
8 months ago ATpoint ★ 5.0k
0
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0
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17k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
8 months ago ATpoint ★ 5.0k
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0
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3.4k
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Comment: Comment: Check removeBatchEffect effectiveness
8 months ago ATpoint ★ 5.0k
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2
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2.9k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
8 months ago ATpoint ★ 5.0k
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0
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1.1k
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Answer: Answer: Log2foldchange strange behavior
8 months ago ATpoint ★ 5.0k
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1
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1.1k
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Comment: Comment: Log2foldchange strange behavior
8 months ago ATpoint ★ 5.0k
0
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0
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938
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Answer: Answer: WGCNA
8 months ago ATpoint ★ 5.0k
1,102 results • Page 1 of 23
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