Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
1.3k
views
Answer: Answer: different number of DEG because of outliers
18 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.6k
views
Comment: Comment: DESeq Normalization and miRNAs Filtering
18 months ago ATpoint ★ 4.4k
0
votes
0
replies
535
views
Answer: Answer: processing samples with significantly different counts
18 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.6k
views
Answer: Answer: DESeq Normalization and miRNAs Filtering
18 months ago ATpoint ★ 4.4k
1
vote
2
replies
836
views
Answer: Answer: Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
18 months ago ATpoint ★ 4.4k
0
votes
1
reply
867
views
Comment: Comment: Does the running time of DESeq function is much more longer for design factor co
18 months ago ATpoint ★ 4.4k
1
vote
0
replies
867
views
Comment: Comment: Horizontal integration of two RNA-seq datasets derived from two different platfo
18 months ago ATpoint ★ 4.4k
1
vote
1
reply
1.2k
views
Answer: Answer: Batch correction and Deseq2
18 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.6k
views
Comment: Comment: SingleR and gcc-8.3.0
18 months ago ATpoint ★ 4.4k
0
votes
0
replies
793
views
Answer: Answer: Heatmap of two conditions from the normalized gene count data
18 months ago ATpoint ★ 4.4k
0
votes
0
replies
888
views
Answer: Answer: Which samples to remove from analysis based on Cook's distance outliers plot
18 months ago ATpoint ★ 4.4k
0
votes
1
reply
607
views
Comment: Comment: DESeq2 for another layer of differential analysis
18 months ago ATpoint ★ 4.4k
0
votes
0
replies
719
views
Answer: Answer: Normalization of RNA seq data before DESeq2 and PCA in case of strong batch effe
18 months ago ATpoint ★ 4.4k
3
votes
1
reply
982
views
Answer: Answer: Batch question Bulk RNA-Seq
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
2.1k
views
Comment: Comment: featureCounts with NCBI T2T not capturing all genes
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.1k
views
Comment: Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.6k
views
Comment: Comment: Knee and Inflection of DropletUtils
19 months ago ATpoint ★ 4.4k
1
vote
0
replies
696
views
Answer: Answer: Subsetting DESeq when different cell types
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
995
views
Answer: Answer: PCA subset of genes vs DE
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.1k
views
Comment: Comment: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.6k
views
Comment: Comment: Knee and Inflection of DropletUtils
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.2k
views
Answer: Answer: package ‘GenomeInfoDb’ could not be loaded
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
2.7k
views
Answer: Answer: bwa mem2 index genome - chipseq analysis
19 months ago ATpoint ★ 4.4k
1
vote
0
replies
1.1k
views
Answer: Answer: Deseq2: Technical replicates for differential expression analysis
19 months ago ATpoint ★ 4.4k
2
votes
0
replies
2.1k
views
Answer: Answer: DESeq2 design after combatseq batch correction
19 months ago ATpoint ★ 4.4k
1
vote
1
reply
965
views
Answer: Answer: What is cpmByGroup used for?
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
883
views
Comment: Comment: Only getting 10 peaks from mac2 callpeak
19 months ago ATpoint ★ 4.4k
1
vote
1
reply
891
views
Answer: Answer: Installation of R-packages for RNA-seq analysis
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
593
views
Comment: Comment: Rbam and Rqc files error
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
514
views
Comment: Comment: Log of Step 1
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
593
views
Comment: Comment: maxfragmentsize problem
19 months ago ATpoint ★ 4.4k
1
vote
1
reply
1.0k
views
Answer: Answer: Query regarding error in installation of "microbiomeutilities" R package
19 months ago ATpoint ★ 4.4k
0
votes
3
replies
2.5k
views
Answer: Answer: Understanding "gene ratio" when using plotEnrich(c())
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.1k
views
Answer: Answer: combining multiple salmon runs after tximport
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.3k
views
Answer: Answer: Why is my log fold change not centered around 0 and lower?
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
3.2k
views
Answer: Answer: DESeq2 after Seurat analysis on integrated datasets
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
682
views
Answer: Answer: logFoldChange results in inverted comparison
19 months ago ATpoint ★ 4.4k
1
vote
0
replies
2.0k
views
Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
19 months ago ATpoint ★ 4.4k
2
votes
1
reply
1.8k
views
Answer: Answer: Input for MAST
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
746
views
Answer: Answer: Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
19 months ago ATpoint ★ 4.4k
0
votes
2
replies
644
views
Answer: Answer: Differences in sample size between conditions - pairwise comparison
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
2.3k
views
Answer: Answer: Conducting pair-wise comparison in DESeq2?
19 months ago ATpoint ★ 4.4k
2
votes
1
reply
1.0k
views
Answer: Answer: Updating DESeq2 object's design with sva output
19 months ago ATpoint ★ 4.4k
0
votes
1
reply
631
views
Answer: Answer: Does DESeq2 work for investigating the gene differential expression before and a
19 months ago ATpoint ★ 4.4k
1
vote
1
reply
3.2k
views
Answer: Answer: DESeq2::plotPCA()
19 months ago ATpoint ★ 4.4k
1
vote
1
reply
1.1k
views
Answer: Answer: Error with FindConservedMarkers()
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
690
views
Answer: Answer: How to add pvalue to boxplot?
19 months ago ATpoint ★ 4.4k
0
votes
0
replies
795
views
Answer: Answer: struggling to create a heatmap
20 months ago ATpoint ★ 4.4k
2
votes
0
replies
2.5k
views
Comment: Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.5k
views
Answer: Answer: Which genes are outliers in DESeq2?
20 months ago ATpoint ★ 4.4k
971 results • Page 10 of 20
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6