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Comment: Comment: Combat and dds Object
20 months ago ATpoint ★ 4.4k
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Answer: Answer: batch effect correction before DESeq2 analysis
20 months ago ATpoint ★ 4.4k
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660
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Answer: Answer: find tandem repeats in DNA
20 months ago ATpoint ★ 4.4k
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Answer: Answer: on which data type limma::removeBatchEffect can be applyed?
20 months ago ATpoint ★ 4.4k
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Comment: Comment: How to normalize long-read RNA-seq data for comparison with short-reads
20 months ago ATpoint ★ 4.4k
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2.4k
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Answer: Answer: DESeq2 in R 4.2.2
20 months ago ATpoint ★ 4.4k
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Comment: Comment: convert local downloaded bigwig files to .bed files
20 months ago ATpoint ★ 4.4k
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Comment: Comment: trying to generate an object from a virtual class ("DataFrame")
20 months ago ATpoint ★ 4.4k
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Answer: Answer: [DESeq2] There is no difference in expression in my heatmap
20 months ago ATpoint ★ 4.4k
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858
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Answer: Answer: RUV with K more than 1.
20 months ago ATpoint ★ 4.4k
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2.9k
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Comment: Comment: Combat and dds Object
20 months ago ATpoint ★ 4.4k
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343
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Answer: Answer: More information on results columns
20 months ago ATpoint ★ 4.4k
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Answer: Answer: How to find degraded genes but unaffected by condition in a time course RNAseq e
20 months ago ATpoint ★ 4.4k
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Comment: Comment: Do the count values should be only integer to be able to use DESeq2?
20 months ago ATpoint ★ 4.4k
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Answer: Answer: Differential RNA seq on TCGA set
20 months ago ATpoint ★ 4.4k
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840
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Comment: Comment: mmc57bl6nj_gene_ensembl biomaRt
20 months ago ATpoint ★ 4.4k
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588
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Answer: Answer: Differential expression between samples of the same group
20 months ago ATpoint ★ 4.4k
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Answer: Answer: Missing transcript
21 months ago ATpoint ★ 4.4k
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Comment: Comment: Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
21 months ago ATpoint ★ 4.4k
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Answer: Answer: Using the standard deviation of DESeq rlog transformed counts to identify genes
21 months ago ATpoint ★ 4.4k
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840
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Answer: Answer: mmc57bl6nj_gene_ensembl biomaRt
21 months ago ATpoint ★ 4.4k
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Comment: Comment: How to search a .narrowPeak file for a list of specific genes using GenomicRange
21 months ago ATpoint ★ 4.4k
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552
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Answer: Answer: DEseq2 for time series analysis of data that are already notmalized
21 months ago ATpoint ★ 4.4k
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565
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Answer: Answer: Time series RNA-seq without conditions
21 months ago ATpoint ★ 4.4k
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907
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Answer: Answer: Confused about tximport-DESeq2 setup
21 months ago ATpoint ★ 4.4k
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851
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Comment: Comment: Celfiles not reading in
21 months ago ATpoint ★ 4.4k
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5.3k
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Comment: Comment: Manually calculating log2 fold change values from DESeq2 normalized counts
21 months ago ATpoint ★ 4.4k
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Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
21 months ago ATpoint ★ 4.4k
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970
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Answer: Answer: suggest to report differential count estimate in DESeq2
21 months ago ATpoint ★ 4.4k
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1.2k
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Comment: Comment: low counts from microRNA seq
21 months ago ATpoint ★ 4.4k
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1.2k
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Comment: Comment: low counts from microRNA seq
21 months ago ATpoint ★ 4.4k
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1.2k
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Answer: Answer: low counts from microRNA seq
21 months ago ATpoint ★ 4.4k
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684
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Comment: Comment: I need help with EdgeR!
21 months ago ATpoint ★ 4.4k
2
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793
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limma: R-squared for time-series data
limma
updated 21 months ago by 51k • written 21 months ago by ★ 4.4k
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Answer: Answer: Using DESeq2 for time-series analysis with two conditions
21 months ago ATpoint ★ 4.4k
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1.7k
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Comment: Comment: Unusual MA and volcano plots?
21 months ago ATpoint ★ 4.4k
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1.7k
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Answer: Answer: Unusual MA and volcano plots?
21 months ago ATpoint ★ 4.4k
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888
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Comment: Comment: Results analysis of differential gene expression using DESeq2 package
21 months ago ATpoint ★ 4.4k
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739
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Answer: Answer: Does the knock down cause transcriptome-wide differences in isoform usage for Pa
22 months ago ATpoint ★ 4.4k
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762
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Comment: Comment: TCGA RNAseq Normalization
22 months ago ATpoint ★ 4.4k
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1.2k
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Comment: Comment: Deseq2 and co-expression network normalization
22 months ago ATpoint ★ 4.4k
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1.2k
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Answer: Answer: unable to load edgeR after installing it
22 months ago ATpoint ★ 4.4k
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1
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1.1k
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Answer: Answer: Changing the sample order in the PCA plot
22 months ago ATpoint ★ 4.4k
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1
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903
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Comment: Comment: Older source of biocFileCache package
22 months ago ATpoint ★ 4.4k
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1.4k
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Answer: Answer: Problem with DESeq2
22 months ago ATpoint ★ 4.4k
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0
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2.4k
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Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
22 months ago ATpoint ★ 4.4k
2
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2.4k
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Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
22 months ago ATpoint ★ 4.4k
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0
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1.9k
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Comment: Comment: Instaling glmGamPoi
22 months ago ATpoint ★ 4.4k
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1.7k
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Comment: Comment: Too many differentially expressed miRNA with limma
22 months ago ATpoint ★ 4.4k
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1.1k
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Answer: Answer: ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
22 months ago ATpoint ★ 4.4k
971 results • Page 11 of 20
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