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Comment: Comment: lfcshrink error DESeq2
2.6 years ago ATpoint ★ 5.0k
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867
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Answer: Answer: Deseq2 design
2.6 years ago ATpoint ★ 5.0k
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3.5k
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Comment: Comment: lfcshrink error DESeq2
2.6 years ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
2.6 years ago ATpoint ★ 5.0k
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1.9k
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Answer: Answer: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
2.6 years ago ATpoint ★ 5.0k
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976
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Comment: Comment: load failed for ‘DESeq2’
2.6 years ago ATpoint ★ 5.0k
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913
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Comment: Comment: WGCNA for one perturbation time series (pooled from two independent replicates)?
2.6 years ago ATpoint ★ 5.0k
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Answer: Answer: failed to use tximport for creating count matrix from kallisto
2.6 years ago ATpoint ★ 5.0k
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2.5k
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Answer: Answer: model matrix not full rank
2.6 years ago ATpoint ★ 5.0k
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818
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Comment: Comment: ANOVA-like testing for bulkRNAseq with three conditions with Wald test
2.6 years ago ATpoint ★ 5.0k
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913
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Answer: Answer: Different regions for normalisation
2.6 years ago ATpoint ★ 5.0k
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871
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Comment: Comment: RNA seq with edgeR with several factors
2.6 years ago ATpoint ★ 5.0k
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825
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Answer: Answer: Performing pair-wise comparisons for smaller p value analyzing time series data
2.6 years ago ATpoint ★ 5.0k
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17k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
2.6 years ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: Combine RNA-seq
2.7 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Answer: Combine RNA-seq
2.7 years ago ATpoint ★ 5.0k
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1.0k
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Answer: Answer: RNA-seq data collected at differnt time points
2.7 years ago ATpoint ★ 5.0k
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5.7k
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Answer: Answer: package ‘Bioconductor’ is not available for Bioconductor version '3.16'
2.7 years ago ATpoint ★ 5.0k
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1.6k
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Answer: Answer: tximport error
2.7 years ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: WGCNA problem
2.7 years ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: fc value in ggmaplot does not correspond to the real lfc value on the plot
2.7 years ago ATpoint ★ 5.0k
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1.4k
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Answer: Answer: fc value in ggmaplot does not correspond to the real lfc value on the plot
2.7 years ago ATpoint ★ 5.0k
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0
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1.7k
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Comment: Comment: calculate distance to a certain sequence in one gene
2.7 years ago ATpoint ★ 5.0k
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570
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Comment: Comment: Package requires binary executable from external software?
2.7 years ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: Tximeta error in analysis of downloaded data
2.7 years ago ATpoint ★ 5.0k
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2.1k
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Answer: Answer: Speedglm dependency issue?
2.7 years ago ATpoint ★ 5.0k
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1
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2.6k
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Comment: Comment: How to get TPM / FPKM after batch correction with DESeq2?
2.7 years ago ATpoint ★ 5.0k
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773
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Comment: Comment: Sample expression calculation in rna seq
2.7 years ago ATpoint ★ 5.0k
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2.6k
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Answer: Answer: How to get TPM / FPKM after batch correction with DESeq2?
2.7 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Answer: Error in checkFullRank(modelMatrix)
2.7 years ago ATpoint ★ 5.0k
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1.0k
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Comment: Comment: Down weighing an outlier in DESeq2 ?
2.7 years ago ATpoint ★ 5.0k
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3.2k
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Answer: Answer: FPKM t-test vs DEseq2
2.7 years ago ATpoint ★ 5.0k
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1.0k
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Answer: Answer: Down weighing an outlier in DESeq2 ?
2.7 years ago ATpoint ★ 5.0k
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0
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855
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Answer: Answer: Performing a one-sided test for differential expression analysis in edgeR
2.7 years ago ATpoint ★ 5.0k
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2
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5.5k
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Answer: Answer: DESeq2 for single cell pseudobulk processing
2.7 years ago ATpoint ★ 5.0k
2
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1
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938
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Comment: Comment: How Can I Assess the Reliability of BCV (Square-Root Dispersion) in Non-Replicat
2.7 years ago ATpoint ★ 5.0k
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1
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1.5k
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Answer: Answer: Removing Unwanted Variations
2.7 years ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: Differential Expression Analysis between Clusters
2.7 years ago ATpoint ★ 5.0k
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1.6k
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Answer: Answer: ModuleExprScore function/ hdWGNCA
2.7 years ago ATpoint ★ 5.0k
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4
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5.2k
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Answer: Answer: blockwiseModule crashes in the end and doesn't generate modules
2.7 years ago ATpoint ★ 5.0k
3
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3.8k
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Answer: Answer: Normalisation of data using DESeq2 with multi-groups
2.7 years ago ATpoint ★ 5.0k
0
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1
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832
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Answer: Answer: DESeq2 design matrix accounting for high heterogeneity of individuals inside a g
2.7 years ago ATpoint ★ 5.0k
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0
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924
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Answer: Answer: Can I run deseq2 on two separate experiments at once?
2.7 years ago ATpoint ★ 5.0k
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0
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2.9k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
2.7 years ago ATpoint ★ 5.0k
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2.9k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
2.7 years ago ATpoint ★ 5.0k
1
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1
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2.9k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
2.7 years ago ATpoint ★ 5.0k
1
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1
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2.9k
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Answer: Answer: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
2.7 years ago ATpoint ★ 5.0k
0
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1
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3.5k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
2.7 years ago ATpoint ★ 5.0k
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3.2k
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Answer: Answer: RNA-seq analysis without replicates
2.7 years ago ATpoint ★ 5.0k
0
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0
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512
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Answer: Answer: DESeq
2.7 years ago ATpoint ★ 5.0k
1,100 results • Page 11 of 22
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