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Comment: Comment: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Knee and Inflection of DropletUtils
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: package ‘GenomeInfoDb’ could not be loaded
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: bwa mem2 index genome - chipseq analysis
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Deseq2: Technical replicates for differential expression analysis
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 design after combatseq batch correction
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: What is cpmByGroup used for?
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Only getting 10 peaks from mac2 callpeak
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Installation of R-packages for RNA-seq analysis
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Rbam and Rqc files error
2.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Log of Step 1
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Comment: Comment: maxfragmentsize problem
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Query regarding error in installation of "microbiomeutilities" R package
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Understanding "gene ratio" when using plotEnrich(c())
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: combining multiple salmon runs after tximport
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Why is my log fold change not centered around 0 and lower?
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 after Seurat analysis on integrated datasets
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: logFoldChange results in inverted comparison
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Input for MAST
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
2.8 years ago ATpoint ★ 5.0k
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Answer: Answer: Differences in sample size between conditions - pairwise comparison
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Conducting pair-wise comparison in DESeq2?
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Updating DESeq2 object's design with sva output
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Does DESeq2 work for investigating the gene differential expression before and a
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2::plotPCA()
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Error with FindConservedMarkers()
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: How to add pvalue to boxplot?
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: struggling to create a heatmap
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Which genes are outliers in DESeq2?
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Combat and dds Object
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: batch effect correction before DESeq2 analysis
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: find tandem repeats in DNA
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: on which data type limma::removeBatchEffect can be applyed?
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: How to normalize long-read RNA-seq data for comparison with short-reads
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 in R 4.2.2
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: convert local downloaded bigwig files to .bed files
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: trying to generate an object from a virtual class ("DataFrame")
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: [DESeq2] There is no difference in expression in my heatmap
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: RUV with K more than 1.
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Combat and dds Object
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: More information on results columns
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: How to find degraded genes but unaffected by condition in a time course RNAseq e
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Do the count values should be only integer to be able to use DESeq2?
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Differential RNA seq on TCGA set
2.9 years ago ATpoint ★ 5.0k
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Comment: Comment: mmc57bl6nj_gene_ensembl biomaRt
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Differential expression between samples of the same group
2.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Missing transcript
3.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
3.0 years ago ATpoint ★ 5.0k
1,100 results • Page 13 of 22
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