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Comment: Comment: DESeq2 Log2 fold change does not make sense given change in TPM
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: DEseq2 Analysis over multiple tissues and conditions only gives 16 coefficients
2.5 years ago ATpoint ★ 4.4k
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Answer: Answer: DESEq2 erroe
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: Large difference between naive log2 and rlog transformation of count data
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: Large difference between naive log2 and rlog transformation of count data
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: Bioconductor installation problems
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
2.5 years ago ATpoint ★ 4.4k
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Comment: Comment: Handling of missing values in limma
2.5 years ago ATpoint ★ 4.4k
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Answer: Answer: How to export Slurm to my PATH in Ubuntu 20.04
2.6 years ago ATpoint ★ 4.4k
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Comment: Comment: How to install R package from GitHub
2.6 years ago ATpoint ★ 4.4k
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Answer: Answer: Excluding samples as referenced in SummarizedExperiment vignette
2.6 years ago ATpoint ★ 4.4k
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Comment: Comment: saving png images and X11
2.6 years ago ATpoint ★ 4.4k
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Comment: Comment: How to determine if limma can adjust for batch effect
2.6 years ago ATpoint ★ 4.4k
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Answer: Answer: Error in findOverlaps function
2.6 years ago ATpoint ★ 4.4k
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Answer: Answer: 95% Confidence intervals for Fold Changes computed by DESeq2
2.6 years ago ATpoint ★ 4.4k
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Comment: Comment: runPCA error / Error in runSVD(x, k = rank, nu = ifelse(get.pcs, rank, 0), nv =
2.6 years ago ATpoint ★ 4.4k
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904
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Comment: Comment: How to get DESeq2 results in large count matix files?
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: Install DESeq2 problem for macbook pro M1 Max
2.7 years ago ATpoint ★ 4.4k
2
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Answer: Answer: fgsea not downloading due to new r version. Is there a way around this?
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: Large DE LogFC range
2.7 years ago ATpoint ★ 4.4k
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Answer: Answer: airway package not compatible with R version 4.1.2 (2021-11-01)
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: trackviewer gi2track not found
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: How to remove batch effect from RNA-seq without count data?
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: DESeq2 median of ratios normalization for signature score calculation
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: Help with droplevels in Deseq2
2.7 years ago ATpoint ★ 4.4k
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547
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Comment: Comment: Help with installing Biocmanager
2.7 years ago ATpoint ★ 4.4k
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2.0k
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Comment: Comment: DESeq2 analysis for targeted RNA-seq
2.7 years ago ATpoint ★ 4.4k
2
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2.2k
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Answer: Answer: Help with droplevels in Deseq2
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: Start to End RNA-Seq with R Bioconductor
2.7 years ago ATpoint ★ 4.4k
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Answer: Answer: Ensembl dataset version
2.7 years ago ATpoint ★ 4.4k
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Comment: Comment: RNAseq using galaxy
2.7 years ago ATpoint ★ 4.4k
2
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6.9k
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Answer: Answer: "Paired-end reads were detected in single-end read library"
2.8 years ago ATpoint ★ 4.4k
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Comment: Comment: Can't convert dog ensembl IDs into gene names
2.8 years ago ATpoint ★ 4.4k
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Comment: Comment: velociraptor preparation
2.8 years ago ATpoint ★ 4.4k
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1.8k
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Comment: Comment: deseq2 machine sizing best practices for very large data set
2.8 years ago ATpoint ★ 4.4k
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1.3k
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Comment: Comment: seqinfo got changed after `library(rtracklayer)`
2.8 years ago ATpoint ★ 4.4k
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Comment: Comment: Error with hclust
2.8 years ago ATpoint ★ 4.4k
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1.3k
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Answer: Answer: Error with hclust
2.8 years ago ATpoint ★ 4.4k
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Comment: Comment: deseq2 datasetfrommatrix
2.8 years ago ATpoint ★ 4.4k
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Comment: Comment: Suppress messages from ALL calls to load package
2.8 years ago ATpoint ★ 4.4k
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1.4k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
2.8 years ago ATpoint ★ 4.4k
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Answer: Answer: normalizing EXOM-seq read using DESeq2
2.8 years ago ATpoint ★ 4.4k
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biomaRt connection error
biomaRt
updated 2.9 years ago by ★ 6.5k • written 2.9 years ago by ★ 4.4k
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Answer: Answer: WGCA tutorial related question
3.0 years ago ATpoint ★ 4.4k
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7.4k
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Answer: Answer: Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
3.0 years ago ATpoint ★ 4.4k
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Answer: Answer: DESeq2 differential expression analysis of protein coding genes only
3.0 years ago ATpoint ★ 4.4k
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Comment: Comment: spearman correlation
3.0 years ago ATpoint ★ 4.4k
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648
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Answer: Answer: DESeq2 (version 1.10 vs 1.30)
3.0 years ago ATpoint ★ 4.4k
971 results • Page 15 of 20
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