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Answer: Answer: Should I set a seed prior to running AUCell?
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: t.test to determine the P-value in DESeq2
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: t.test to determine the P-value in DESeq2
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: How to convert transcript counts to gene counts in R?
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 - Differential expression for miRNA data
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: featureCounts: No effect of setting -d and -D?
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: What is the correct way to import transcript abundances from 3' Quantseq results
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: Skew of differentially expressed genes using DESeq2
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 for ribo-IP analysis
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 for ribo-IP analysis
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: multiple correction on mean of TPM
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: Combine scRNAseq data for bulk analysis using DESeq2
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: I have problems installing DESeq2 using R4.1.2. It tells me that it is not avail
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: Removing metadata rows containing NA values in GRanges
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: Properly constructing a hypergeometric test
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: Extracting multi-design adjusted counts on DESeq2
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: merge TPM values for same geneID
3.2 years ago ATpoint ★ 5.0k
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Answer: Answer: merge TPM values for same geneID
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: No differentially expressed genes after DESeq
3.2 years ago ATpoint ★ 5.0k
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Comment: Comment: DESEQ2 several samples per individual
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: DESEQ2 several samples per individual
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Bioconductor Rpackages install
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: difference between txi$counts and txi$abundance when countsFromAbundance is true
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: Confused about design for RNA seq experiment
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: tcga expression data
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Gene abundance DESEq
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: BaseMean threshold
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: BaseMean threshold
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: rtacklayer::import.bed silently adds 1 to the start coordinates
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Understanding tximport working with salmon outputs
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: Getting the normalized counts after running DESeq()
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Summary of library size factor is all equal to one
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: What is the effect of passage number in the differential gene expression when pe
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: How to design multifactor DESEQ2 formula?
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: getBM Error with certain attribute combinations
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Understanding how to contrast two treatments in DESeq2
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: output file conversion from FeatureCount to DESeq2 - no duplicate for samples
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: resultsNames(dds) not showing all contrasts
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: DESEq2 rerun gives different results
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: HTSeq command option for single-end reads
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: HTSeq command option for single-end reads
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: how to plot the union of the 100 most expressed genes
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: HTSeq command option for single-end reads
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: using of z score in Differentially Expression Analysis
3.3 years ago ATpoint ★ 5.0k
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Comment: Comment: using of z score in Differentially Expression Analysis
3.3 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 on normalized data
3.4 years ago ATpoint ★ 5.0k
1,102 results • Page 15 of 23
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