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Comment: Comment: TPM normalization starting with read counts
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Adding custom transcript to Salmon index
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Change my bedgraph file to wig in R
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Issues installing DESeq2 package with R version 4.2.1
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Issues installing DESeq2 package with R version 4.2.1
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Detection of reference genes by Deseq2
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Which is the best type of data for correlation or survival analysis
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: MEDIPS for chIP-Seq
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Handling heterogeneous data in DESeq2: multiple covariates to control against
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: batch effect
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: batch effect
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: SingleCellExperiment: Edit cluster IDs in colLabels
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Error in running: classifySingleR from SingleR package
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Convert an R data.frame to a bed file in R
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: MAAPER
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Subsetting a DESeq object - gene-wise dispersions
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Convert an R data.frame to a bed file in R
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 aggregated single cell data
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 - transcript length correction necessary when quantifying reads from ends
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Help with featureCounts
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Quality control of scRNA-seq data using mitochondrial ratio (drosophila)
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Remove unwanted variation/confounder due to library size with sva
3.4 years ago ATpoint ★ 5.0k
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Comment: Comment: DeSeq2 Matched Analysis
3.4 years ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 analysis has not been run for this contrast
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: proteomics analysis
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: proteomics analysis
3.5 years ago ATpoint ★ 5.0k
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Answer: Answer: Iterating over a column within colData@listData
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMet
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: How to get DESeq2 results for a list of genes
3.5 years ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Error while running DESeq2
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: How to get DESeq2 results for a list of genes
3.5 years ago ATpoint ★ 5.0k
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813
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Answer: Answer: Error
3.5 years ago ATpoint ★ 5.0k
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Answer: Answer: How to get DESeq2 results for a list of genes
3.5 years ago ATpoint ★ 5.0k
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Answer: Answer: setting sizeFactors from scran :: caculateSumFactors.
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: How can i fix this problem in R
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: Use of Scater for QC in scRNA-seq: How to remove cells with less than certain nu
3.5 years ago ATpoint ★ 5.0k
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Answer: Answer: Error: DESeq(dds , useT = TRUE, minmu = 1e-06, test = "LRT", : likelih
3.5 years ago ATpoint ★ 5.0k
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Answer: Answer: RSEM - tximport; where is effective_length information used? Implications for sc
3.5 years ago ATpoint ★ 5.0k
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Answer: Answer: Confused about using RUVg in getting negative control genes using RUVg
3.5 years ago ATpoint ★ 5.0k
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Comment: Comment: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
3.5 years ago ATpoint ★ 5.0k
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3.5k
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Comment: Comment: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
3.5 years ago ATpoint ★ 5.0k
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3.5k
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Answer: Answer: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
3.5 years ago ATpoint ★ 5.0k
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0
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991
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Answer: Answer: lfc Shrinkage with multiple comparison groups
3.6 years ago ATpoint ★ 5.0k
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Comment: Comment: Design set up, interaction or group? Two Salinities treatments, Five Populations
3.6 years ago ATpoint ★ 5.0k
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Answer: Answer: Workflow type=Star_counts, I want to download FPKM or TPM values, but star_count
3.6 years ago ATpoint ★ 5.0k
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Comment: Comment: Error in DEseq
3.6 years ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Error in DEseq
3.6 years ago ATpoint ★ 5.0k
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1.9k
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Answer: Answer: Error in DEseq
3.6 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 counts error in as.data.frame
3.6 years ago ATpoint ★ 5.0k
1,102 results • Page 16 of 23
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