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Comment: Comment: How to count barcode sequences in a fastq file
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 paired design
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Batch-corrected expression matrix NOT on a log2 scale
4.4 years ago ATpoint ★ 5.0k
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Comment: Comment: identifying trends in RNA-seq data
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: identifying trends in RNA-seq data
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: Combat and dds Object
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: Combining HTSeq and RNA-SeQ for differential analysis
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: Best practice for quantifying sncRNA
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: P value and Adj. P value showing N/A
4.5 years ago ATpoint ★ 5.0k
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Answer: Answer: ChIPQC: log2 or log10?
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: The P-values with lfcShrink and ashr shrinkage estimator
4.5 years ago ATpoint ★ 5.0k
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Answer: Answer: Unable to install SSPA packages
4.5 years ago ATpoint ★ 5.0k
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958
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Answer: Answer: samples did not decently separate via pcaPlot
4.5 years ago ATpoint ★ 5.0k
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Answer: Answer: Single R-- Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x &&
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: matrix with Salmon gene-level quantifications in DESeq
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: subset a list based on table
4.5 years ago ATpoint ★ 5.0k
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Answer: Answer: subset a list based on table
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: Clarification re VST transformed data in DESeq2
4.5 years ago ATpoint ★ 5.0k
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4.9k
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Answer: Answer: Clarification re VST transformed data in DESeq2
4.5 years ago ATpoint ★ 5.0k
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Comment: Comment: cannot install edgeR on M1 Mac
4.6 years ago ATpoint ★ 5.0k
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1.5k
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Answer: Answer: DESseq2 question about VST and rlog
4.6 years ago ATpoint ★ 5.0k
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2.7k
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Comment: Comment: bcftools command not found
4.6 years ago ATpoint ★ 5.0k
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Comment: Comment: Bias of lowly expressed genes in DESeq2
4.6 years ago ATpoint ★ 5.0k
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Answer: Answer: Bias of lowly expressed genes in DESeq2
4.6 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 time course confusion
4.6 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 time course confusion
4.6 years ago ATpoint ★ 5.0k
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Comment: Comment: edgeR calcNormFactors or normalize with voom?
4.6 years ago ATpoint ★ 5.0k
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Answer: Answer: Problem installing packages including flowWorkspace
4.6 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Answer: matrix with Salmon gene-level quantifications in DESeq
4.6 years ago ATpoint ★ 5.0k
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8.7k
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Comment: Comment: installing older versions of packages
4.6 years ago ATpoint ★ 5.0k
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Answer: Answer: where to download practice data
4.6 years ago ATpoint ★ 5.0k
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Comment: Comment: How to calculate high and low tumor mutational burden
4.6 years ago ATpoint ★ 5.0k
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2.1k
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Answer: Answer: Can't install DESeq2 because of libxml
4.7 years ago ATpoint ★ 5.0k
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Comment: Comment: It takes a so long time to run DESeq2 on 1000 samples
4.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Technical reps
4.7 years ago ATpoint ★ 5.0k
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Comment: Comment: Controlling for Batch Effect and Grouping in DESEQ2
4.7 years ago ATpoint ★ 5.0k
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7.4k
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Comment: Comment: Problems installing DESeq2
4.7 years ago ATpoint ★ 5.0k
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2.2k
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Comment: Comment: Effect of feature number on adjusted p-values
4.7 years ago ATpoint ★ 5.0k
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2.6k
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Answer: Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
4.7 years ago ATpoint ★ 5.0k
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2.8k
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Answer: Answer: Error installing Deseq2
4.7 years ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: lmFit, number of proteins
4.7 years ago ATpoint ★ 5.0k
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2.5k
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Comment: Comment: DESeq2 multiple conditions, time points and sample types
4.7 years ago ATpoint ★ 5.0k
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2.8k
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Comment: Comment: Number of DEGs with adj pvalue < 0.05
4.7 years ago ATpoint ★ 5.0k
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4.0k
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Comment: Comment: While trying to remove non differentially expressed genes through limma, I am ge
4.8 years ago ATpoint ★ 5.0k
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1
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4.0k
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Comment: Comment: While trying to remove non differentially expressed genes through limma, I am ge
4.8 years ago ATpoint ★ 5.0k
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Answer: Comment: How estimateDisp, glmQLFit and glmQLFTest process my TMM normalized read count m
4.8 years ago ATpoint ★ 5.0k
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Comment: Comment: GEO + RNA-seq. Total Newbie.
4.8 years ago ATpoint ★ 5.0k
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Comment: Comment: DESEQ2: Some genes have empty pvalue and padj
4.8 years ago ATpoint ★ 5.0k
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Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
4.8 years ago ATpoint ★ 5.0k
1,103 results • Page 19 of 23
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