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Comment: Comment: DiffBind can't find a DAR
7 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
7 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq - help with pair wise comparisons
7 months ago ATpoint ★ 5.0k
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3.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
7 months ago ATpoint ★ 5.0k
0
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1
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3.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
7 months ago ATpoint ★ 5.0k
0
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1
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3.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
7 months ago ATpoint ★ 5.0k
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750
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Answer: Answer: DESeq2
7 months ago ATpoint ★ 5.0k
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994
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Comment: Comment: ComBat with repeated measures
7 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Surprising behavior for DEXseq dispersion estimate plot?
7 months ago ATpoint ★ 5.0k
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1.5k
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Comment: Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
7 months ago ATpoint ★ 5.0k
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Answer: Answer: Explannation for ROAST results
7 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Using TPM from tximport of Salmon output for singscore
8 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
8 months ago ATpoint ★ 5.0k
0
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1
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799
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Comment: Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
8 months ago ATpoint ★ 5.0k
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647
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Answer: Answer: affy::rma results doesn't match with ncbi website
8 months ago ATpoint ★ 5.0k
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2
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Answer: Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
8 months ago ATpoint ★ 5.0k
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728
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Comment: Comment: Removing UTR from GTF for gene quantification
8 months ago ATpoint ★ 5.0k
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862
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Comment: Comment: Using tximport for kallisto aligned recount2 data
8 months ago ATpoint ★ 5.0k
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972
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Comment: Comment: how many significant figures are there in DESeq2 output
8 months ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
8 months ago ATpoint ★ 5.0k
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972
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Answer: Answer: how many significant figures are there in DESeq2 output
8 months ago ATpoint ★ 5.0k
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1.9k
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Answer: Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
8 months ago ATpoint ★ 5.0k
0
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1.4k
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Answer: Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
8 months ago ATpoint ★ 5.0k
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1
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1.4k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
8 months ago ATpoint ★ 5.0k
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444
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Answer: Answer: DEseq2 design for additive treatment
8 months ago ATpoint ★ 5.0k
2
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808
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Answer: Answer: Plot title for PCA in DESeq2
8 months ago ATpoint ★ 5.0k
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1.2k
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Answer: Answer: Automatically install dependencies
9 months ago ATpoint ★ 5.0k
1
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1.3k
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Comment: Comment: Weird p-values using DESeq2?
9 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Overcoming confounding in batch effect correction
9 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Overcoming confounding in batch effect correction
9 months ago ATpoint ★ 5.0k
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0
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743
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Answer: Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi
9 months ago ATpoint ★ 5.0k
0
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0
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415
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Answer: Answer: Error: lexical error: invalid char in json text (alevin-seurat)
9 months ago ATpoint ★ 5.0k
0
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1
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914
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Answer: Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
9 months ago ATpoint ★ 5.0k
0
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1
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1.4k
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Comment: Comment: Why select top highly expressed genes based on normalized counts, but then plot
9 months ago ATpoint ★ 5.0k
0
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1
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1.4k
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Answer: Answer: Why select top highly expressed genes based on normalized counts, but then plot
9 months ago ATpoint ★ 5.0k
0
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1
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846
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Comment: Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
9 months ago ATpoint ★ 5.0k
0
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0
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545
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Answer: Answer: WGCNA sample-data preprocessing order
9 months ago ATpoint ★ 5.0k
0
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1
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522
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Answer: Answer: WGCNA: Can we use high power (26) for signed network?
9 months ago ATpoint ★ 5.0k
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330
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Answer: Answer: Ph.D. scholar
9 months ago ATpoint ★ 5.0k
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890
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Comment: Comment: EdgeR Biological CVs
9 months ago ATpoint ★ 5.0k
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1
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948
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Answer: Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
9 months ago ATpoint ★ 5.0k
0
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1
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1.9k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
10 months ago ATpoint ★ 5.0k
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471
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Comment: Comment: Installation error for Rsamtools.
10 months ago ATpoint ★ 5.0k
1
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0
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1.9k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
10 months ago ATpoint ★ 5.0k
1
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2
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1.9k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
10 months ago ATpoint ★ 5.0k
0
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2
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894
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Answer: Answer: DESeq2 analysis with transcript counts
10 months ago ATpoint ★ 5.0k
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1
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1.6k
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Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
10 months ago ATpoint ★ 5.0k
0
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1
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705
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Answer: Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
10 months ago ATpoint ★ 5.0k
2
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0
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972
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Answer: Answer: Standardization of rlog transformed counts before PCA
11 months ago ATpoint ★ 5.0k
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0
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1.3k
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
11 months ago ATpoint ★ 5.0k
1,097 results • Page 2 of 22
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