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Comment: Comment: Differential expression analysis using two TCGA datasets
8 months ago ATpoint ★ 5.0k
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Answer: Answer: PhD scholar
8 months ago ATpoint ★ 5.0k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
8 months ago ATpoint ★ 5.0k
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Answer: Answer: Origin of the labels for the SingleCellMultiModal dataset
8 months ago ATpoint ★ 5.0k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
8 months ago ATpoint ★ 5.0k
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Comment: Comment: DiffBind can't find a DAR
8 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
8 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq - help with pair wise comparisons
8 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
8 months ago ATpoint ★ 5.0k
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3.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
8 months ago ATpoint ★ 5.0k
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3.0k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
9 months ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2
9 months ago ATpoint ★ 5.0k
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Comment: Comment: ComBat with repeated measures
9 months ago ATpoint ★ 5.0k
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Comment: Comment: Surprising behavior for DEXseq dispersion estimate plot?
9 months ago ATpoint ★ 5.0k
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Comment: Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
9 months ago ATpoint ★ 5.0k
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Answer: Answer: Explannation for ROAST results
9 months ago ATpoint ★ 5.0k
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Comment: Comment: Using TPM from tximport of Salmon output for singscore
9 months ago ATpoint ★ 5.0k
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Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
9 months ago ATpoint ★ 5.0k
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879
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Comment: Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
9 months ago ATpoint ★ 5.0k
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Answer: Answer: affy::rma results doesn't match with ncbi website
9 months ago ATpoint ★ 5.0k
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Answer: Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
9 months ago ATpoint ★ 5.0k
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786
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Comment: Comment: Removing UTR from GTF for gene quantification
9 months ago ATpoint ★ 5.0k
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900
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Comment: Comment: Using tximport for kallisto aligned recount2 data
9 months ago ATpoint ★ 5.0k
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Comment: Comment: how many significant figures are there in DESeq2 output
10 months ago ATpoint ★ 5.0k
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Comment: Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
10 months ago ATpoint ★ 5.0k
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Answer: Answer: how many significant figures are there in DESeq2 output
10 months ago ATpoint ★ 5.0k
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Answer: Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
10 months ago ATpoint ★ 5.0k
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1.4k
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Answer: Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
10 months ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
10 months ago ATpoint ★ 5.0k
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464
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Answer: Answer: DEseq2 design for additive treatment
10 months ago ATpoint ★ 5.0k
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859
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Answer: Answer: Plot title for PCA in DESeq2
10 months ago ATpoint ★ 5.0k
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Answer: Answer: Automatically install dependencies
10 months ago ATpoint ★ 5.0k
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Comment: Comment: Weird p-values using DESeq2?
10 months ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: Overcoming confounding in batch effect correction
10 months ago ATpoint ★ 5.0k
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Comment: Comment: Overcoming confounding in batch effect correction
10 months ago ATpoint ★ 5.0k
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796
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Answer: Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi
10 months ago ATpoint ★ 5.0k
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448
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Answer: Answer: Error: lexical error: invalid char in json text (alevin-seurat)
10 months ago ATpoint ★ 5.0k
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1
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939
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Answer: Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
11 months ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: Why select top highly expressed genes based on normalized counts, but then plot
11 months ago ATpoint ★ 5.0k
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1.4k
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Answer: Answer: Why select top highly expressed genes based on normalized counts, but then plot
11 months ago ATpoint ★ 5.0k
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Comment: Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
11 months ago ATpoint ★ 5.0k
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620
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Answer: Answer: WGCNA sample-data preprocessing order
11 months ago ATpoint ★ 5.0k
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574
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Answer: Answer: WGCNA: Can we use high power (26) for signed network?
11 months ago ATpoint ★ 5.0k
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361
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Answer: Answer: Ph.D. scholar
11 months ago ATpoint ★ 5.0k
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962
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Comment: Comment: EdgeR Biological CVs
11 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
11 months ago ATpoint ★ 5.0k
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1
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2.1k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
11 months ago ATpoint ★ 5.0k
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527
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Comment: Comment: Installation error for Rsamtools.
11 months ago ATpoint ★ 5.0k
1
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2.1k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
11 months ago ATpoint ★ 5.0k
1
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2
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
11 months ago ATpoint ★ 5.0k
1,102 results • Page 2 of 23
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