Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
329
views
Comment: Comment: WGCNA with TPM tables
4 months ago ATpoint ★ 4.8k
0
votes
0
replies
232
views
Comment: Comment: eRNAs count
4 months ago ATpoint ★ 4.8k
1
vote
0
replies
350
views
Comment: Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
4 months ago ATpoint ★ 4.8k
0
votes
0
replies
481
views
Answer: Answer: DESeq2 rerun returns different results
4 months ago ATpoint ★ 4.8k
1
vote
0
replies
797
views
Answer: Answer: Handling biological replicates in DESeq2
4 months ago ATpoint ★ 4.8k
0
votes
1
reply
1.2k
views
Answer: Answer: Volcano plot has many values around zero
4 months ago ATpoint ★ 4.8k
2
votes
1
reply
891
views
Comment: Comment: DESeq Input from Salmon + tximport/tximeta
4 months ago ATpoint ★ 4.8k
0
votes
0
replies
1.4k
views
Comment: Comment: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
5 months ago ATpoint ★ 4.8k
0
votes
0
replies
543
views
Answer: Answer: Average expression of genes across replicates
5 months ago ATpoint ★ 4.8k
0
votes
0
replies
612
views
Answer: Answer: Spike-in normalization method in ATACseq
5 months ago ATpoint ★ 4.8k
0
votes
0
replies
1.1k
views
Comment: Comment: New to Deseq2 - DEG questions / MA plot
5 months ago ATpoint ★ 4.8k
1
vote
1
reply
1.1k
views
Answer: Answer: Analysis of large RNA-Seq Datasets
5 months ago ATpoint ★ 4.8k
0
votes
0
replies
360
views
Answer: Answer: how to extract expression matrix post deseq2
5 months ago ATpoint ★ 4.8k
1
vote
0
replies
526
views
Answer: Answer: Automatically generate contrasts from a model matrix / formula
5 months ago ATpoint ★ 4.8k
1
vote
0
replies
790
views
Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
5 months ago ATpoint ★ 4.8k
0
votes
1
reply
314
views
Answer: Answer: Using Normalized Counts in DESeq2
5 months ago ATpoint ★ 4.8k
0
votes
1
reply
926
views
Comment: Comment: What should be the normalization protocol for RNA seq data for WGCNA?
5 months ago ATpoint ★ 4.8k
1
vote
1
reply
926
views
Answer: Answer: What should be the normalization protocol for RNA seq data for WGCNA?
5 months ago ATpoint ★ 4.8k
0
votes
0
replies
677
views
Comment: Comment: How to control batch effect if Group and batch are same?
5 months ago ATpoint ★ 4.8k
0
votes
0
replies
790
views
Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
5 months ago ATpoint ★ 4.8k
5
votes
1
reply
677
views
Answer: Answer: How to control batch effect if Group and batch are same?
6 months ago ATpoint ★ 4.8k
1
vote
0
replies
364
views
Comment: Comment: Normalization RNA-seq for multiple plates
6 months ago ATpoint ★ 4.8k
1
vote
0
replies
466
views
Answer: Answer: DEseq 2 LFC shrinkage with apeglm in single-cell pseudobulk: strange volcano plo
6 months ago ATpoint ★ 4.8k
0
votes
1
reply
1.1k
views
Answer: Answer: New to Deseq2 - DEG questions / MA plot
6 months ago ATpoint ★ 4.8k
1
vote
1
reply
1.1k
views
Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
7 months ago ATpoint ★ 4.8k
1
vote
1
reply
1.1k
views
Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
7 months ago ATpoint ★ 4.8k
0
votes
1
reply
442
views
Answer: Answer: Questions in Regards to LFC shrinkage in DSeq2
7 months ago ATpoint ★ 4.8k
1
vote
0
replies
642
views
Comment: Comment: Gene filtering in DESeq2
7 months ago ATpoint ★ 4.8k
1
vote
0
replies
366
views
Answer: Answer: Deseq2 - differenc in results
7 months ago ATpoint ★ 4.8k
3
votes
3
replies
721
views
voom does not seem to properly correct for library size
limma
updated 7 months ago by 52k • written 7 months ago by ★ 4.8k
0
votes
0
replies
721
views
Comment: Comment: voom does not seem to properly correct for library size
7 months ago ATpoint ★ 4.8k
0
votes
1
reply
771
views
Answer: Answer: More significant genes after lfcShrink in DEseq2?
7 months ago ATpoint ★ 4.8k
1
vote
1
reply
1.1k
views
Comment: Comment: RNASeq normlization for samples with global shift in gene expression
7 months ago ATpoint ★ 4.8k
2
votes
0
replies
1.0k
views
Answer: Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
7 months ago ATpoint ★ 4.8k
2
votes
1
reply
603
views
Answer: Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
7 months ago ATpoint ★ 4.8k
0
votes
0
replies
925
views
Comment: Comment: DiffBind full library size not reliable
7 months ago ATpoint ★ 4.8k
1
vote
0
replies
722
views
Comment: Comment: Optimizing CPM Calculation for Varied RNA-seq Data
7 months ago ATpoint ★ 4.8k
0
votes
2
replies
925
views
Comment: Comment: DiffBind full library size not reliable
7 months ago ATpoint ★ 4.8k
0
votes
1
reply
925
views
Comment: Comment: DiffBind full library size not reliable
7 months ago ATpoint ★ 4.8k
0
votes
1
reply
925
views
Comment: Comment: DiffBind full library size not reliable
8 months ago ATpoint ★ 4.8k
0
votes
0
replies
825
views
Answer: Answer: Validity of SingleR with very small bulk RNAseq reference
8 months ago ATpoint ★ 4.8k
2
votes
2
replies
2.1k
views
Answer: Answer: Plot PCA with ellipses using ggplot
8 months ago ATpoint ★ 4.8k
0
votes
0
replies
1.0k
views
Comment: Comment: Recount3: PCR duplicates
8 months ago ATpoint ★ 4.8k
0
votes
0
replies
704
views
Comment: Comment: Error when trying to do different pairwise comparisons and lfcshrink than what's
8 months ago ATpoint ★ 4.8k
0
votes
1
reply
704
views
Answer: Answer: Error when trying to do different pairwise comparisons and lfcshrink than what's
8 months ago ATpoint ★ 4.8k
0
votes
0
replies
835
views
Answer: Answer: How to rank DEG for GSEA using DEseq2 result ?
8 months ago ATpoint ★ 4.8k
0
votes
0
replies
405
views
Answer: Answer: Run DEXSeq successfully but got a result that padj==1 in all genes
8 months ago ATpoint ★ 4.8k
0
votes
0
replies
448
views
Comment: Comment: output from RAIN doesn't look rhythmic
8 months ago ATpoint ★ 4.8k
0
votes
0
replies
353
views
Answer: Answer: unreal negative log2fc values
9 months ago ATpoint ★ 4.8k
0
votes
1
reply
674
views
Comment: Comment: How to search Pubmed Central or other fulltext literature base using regex?
9 months ago ATpoint ★ 4.8k
1,041 results • Page 2 of 21
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6