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Comment: Comment: GSEA preranked analysis downstream of DEseq2
10 months ago ATpoint ★ 5.0k
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Comment: Comment: Check removeBatchEffect effectiveness
10 months ago ATpoint ★ 5.0k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
10 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: Log2foldchange strange behavior
10 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: Log2foldchange strange behavior
10 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: WGCNA
10 months ago ATpoint ★ 5.0k
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Comment: Comment: Differential expression analysis using two TCGA datasets
10 months ago ATpoint ★ 5.0k
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Answer: Answer: PhD scholar
10 months ago ATpoint ★ 5.0k
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3.0k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
10 months ago ATpoint ★ 5.0k
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1.7k
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Answer: Answer: Origin of the labels for the SingleCellMultiModal dataset
10 months ago ATpoint ★ 5.0k
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2
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3.0k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
10 months ago ATpoint ★ 5.0k
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2.5k
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Comment: Comment: DiffBind can't find a DAR
10 months ago ATpoint ★ 5.0k
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3.1k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
10 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: DESeq - help with pair wise comparisons
10 months ago ATpoint ★ 5.0k
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3.1k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
10 months ago ATpoint ★ 5.0k
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3.1k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
10 months ago ATpoint ★ 5.0k
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1
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3.1k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
10 months ago ATpoint ★ 5.0k
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841
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Answer: Answer: DESeq2
11 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: ComBat with repeated measures
11 months ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: Surprising behavior for DEXseq dispersion estimate plot?
11 months ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
11 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: Explannation for ROAST results
11 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Using TPM from tximport of Salmon output for singscore
11 months ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
11 months ago ATpoint ★ 5.0k
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1.0k
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Comment: Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
11 months ago ATpoint ★ 5.0k
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762
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Answer: Answer: affy::rma results doesn't match with ncbi website
11 months ago ATpoint ★ 5.0k
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Answer: Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
11 months ago ATpoint ★ 5.0k
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872
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Comment: Comment: Removing UTR from GTF for gene quantification
11 months ago ATpoint ★ 5.0k
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1
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999
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Comment: Comment: Using tximport for kallisto aligned recount2 data
11 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: how many significant figures are there in DESeq2 output
12 months ago ATpoint ★ 5.0k
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1.5k
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Comment: Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
12 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: how many significant figures are there in DESeq2 output
12 months ago ATpoint ★ 5.0k
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2.6k
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Answer: Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
12 months ago ATpoint ★ 5.0k
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1.5k
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Answer: Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
12 months ago ATpoint ★ 5.0k
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1
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1.5k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
12 months ago ATpoint ★ 5.0k
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492
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Answer: Answer: DEseq2 design for additive treatment
12 months ago ATpoint ★ 5.0k
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976
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Answer: Answer: Plot title for PCA in DESeq2
12 months ago ATpoint ★ 5.0k
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1.7k
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Answer: Answer: Automatically install dependencies
12 months ago ATpoint ★ 5.0k
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1.5k
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Comment: Comment: Weird p-values using DESeq2?
12 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Overcoming confounding in batch effect correction
12 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Overcoming confounding in batch effect correction
12 months ago ATpoint ★ 5.0k
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0
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954
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Answer: Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi
12 months ago ATpoint ★ 5.0k
0
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0
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526
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Answer: Answer: Error: lexical error: invalid char in json text (alevin-seurat)
12 months ago ATpoint ★ 5.0k
0
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1
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984
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Answer: Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
12 months ago ATpoint ★ 5.0k
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1.5k
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Comment: Comment: Why select top highly expressed genes based on normalized counts, but then plot
13 months ago ATpoint ★ 5.0k
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1
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1.5k
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Answer: Answer: Why select top highly expressed genes based on normalized counts, but then plot
13 months ago ATpoint ★ 5.0k
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1
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1.2k
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Comment: Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
13 months ago ATpoint ★ 5.0k
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768
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Answer: Answer: WGCNA sample-data preprocessing order
13 months ago ATpoint ★ 5.0k
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1
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712
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Answer: Answer: WGCNA: Can we use high power (26) for signed network?
13 months ago ATpoint ★ 5.0k
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0
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390
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Answer: Answer: Ph.D. scholar
13 months ago ATpoint ★ 5.0k
1,108 results • Page 2 of 23
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