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Comment: Comment: DESEQ2: Some genes have empty pvalue and padj
4.8 years ago ATpoint ★ 5.0k
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Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
4.8 years ago ATpoint ★ 5.0k
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Comment: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
4.8 years ago ATpoint ★ 5.0k
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Answer: Comment: Comparison when Control is in differen batch
4.8 years ago ATpoint ★ 5.0k
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Answer: Comment: extracting normalized counts from edgeR for using in GSEA
4.8 years ago ATpoint ★ 5.0k
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Answer: Comment: How to remove batch effect from RNA-seq without count data?
4.8 years ago ATpoint ★ 5.0k
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Answer: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
4.8 years ago ATpoint ★ 5.0k
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Comment: Comment: Problem install: Package ‘DESeq2’ is not available for this version of R
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Need help in doing network analysis using R
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Error when calculating DE using the classical approach in edgeR
4.9 years ago ATpoint ★ 5.0k
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Answer: Comment: Error when calculating DE using the classical approach in edgeR
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 design formula and batch correction
4.9 years ago ATpoint ★ 5.0k
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Answer: Comment: fgsea usage question - what gene set to use?
4.9 years ago ATpoint ★ 5.0k
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Answer: Answer: Biological replicates in DESeq2
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Removing rows (countData) from a DESeq Object
4.9 years ago ATpoint ★ 5.0k
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Answer: Comment: Removing rows (countData) from a DESeq Object
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Batch correction and DESeq2
4.9 years ago ATpoint ★ 5.0k
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2.3k
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Comment: Comment: DiffBind analysis for ATAC-Seq error Error processing one or more read files
4.9 years ago ATpoint ★ 5.0k
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Answer: Comment: Exporting DESeq2 filtered results
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Identifying differentially expressed genes
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Identifying differentially expressed genes
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: why does stat column disappears after lfcshrink on deseq 2 and why does fgsea us
4.9 years ago ATpoint ★ 5.0k
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Answer: Comment: I can't get the 2 by 2 comparisons that I need because the matrix is not full of
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: mgcv not updating
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: GTF annotation file for featurecount
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Preprocessing Issue
4.9 years ago ATpoint ★ 5.0k
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Comment: Comment: Error in (function (classes, fdef, mtable) : unable to find an inherited met
5.0 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Comment: DSEQ apeglm
5.0 years ago ATpoint ★ 5.0k
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2.1k
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apeglm -- influence of reference level on logFC and svalues
DESeq2 apeglm
updated 5.0 years ago by 43k • written 5.0 years ago by ★ 5.0k
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Comment: Comment: Normalisation in DESeq2
5.0 years ago ATpoint ★ 5.0k
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2.8k
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Answer: Comment: Normalisation in DESeq2
5.0 years ago ATpoint ★ 5.0k
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4.3k
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Comment: Comment: DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but
5.0 years ago ATpoint ★ 5.0k
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Comment: Comment: Question: export edgeR normalised OTU table
5.0 years ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: differential loop using DESeq2
5.0 years ago ATpoint ★ 5.0k
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4.3k
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Comment: Comment: Failed to find a rowRanges() method
5.0 years ago ATpoint ★ 5.0k
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4.3k
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Answer: Answer: Failed to find a rowRanges() method
5.0 years ago ATpoint ★ 5.0k
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677
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Answer: Comment: Using Deseq2 for RNA-seq analysis of 4 different groups of cells
5.0 years ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: Using transformed matrix in DESeq2
5.1 years ago ATpoint ★ 5.0k
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3.2k
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Comment: Comment: Extract canonical coding sequence with getBM
5.1 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Comment: Using transformed matrix in DESeq2
5.1 years ago ATpoint ★ 5.0k
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3.2k
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Comment: Comment: Extract canonical coding sequence with getBM
5.1 years ago ATpoint ★ 5.0k
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1.2k
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Answer: Comment: DESeq2 interactions genotype condition code needed
5.1 years ago ATpoint ★ 5.0k
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1.8k
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Answer: Comment: Trouble with Tximport
5.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Differential expression on RNAseq without replicates
5.1 years ago ATpoint ★ 5.0k
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Comment: Answer: Recycling a DNAStringSet over an IRangesList in extractAt()
5.1 years ago ATpoint ★ 5.0k
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912
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Comment: Comment: DESEQ2 Differential Expression controlling for two factors
5.1 years ago ATpoint ★ 5.0k
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2.6k
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Answer: Answer: DESeq2 variance stabilizing transformation: why is assay() different from getVar
5.1 years ago ATpoint ★ 5.0k
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4.7k
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Comment: Comment: Normalization in DiffBind for Atac-seq
5.1 years ago ATpoint ★ 5.0k
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4.7k
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Comment: Comment: Normalization in DiffBind for Atac-seq
5.1 years ago ATpoint ★ 5.0k
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11k
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Answer: Answer: Add selected row names on pheatmap
5.1 years ago ATpoint ★ 5.0k
1,105 results • Page 20 of 23
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