Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.3k
views
Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
11 months ago ATpoint ★ 5.0k
0
votes
1
reply
1.3k
views
Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
11 months ago ATpoint ★ 5.0k
1
vote
0
replies
3.4k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
11 months ago ATpoint ★ 5.0k
2
votes
1
reply
1.3k
views
Answer: Answer: RSubread output significantly different from bash Subread output
11 months ago ATpoint ★ 5.0k
1
vote
1
reply
3.4k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
11 months ago ATpoint ★ 5.0k
1
vote
1
reply
3.4k
views
Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
11 months ago ATpoint ★ 5.0k
0
votes
0
replies
673
views
Comment: Comment: WGCNA with TPM tables
11 months ago ATpoint ★ 5.0k
0
votes
0
replies
412
views
Comment: Comment: eRNAs count
12 months ago ATpoint ★ 5.0k
1
vote
0
replies
513
views
Comment: Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
12 months ago ATpoint ★ 5.0k
0
votes
0
replies
615
views
Answer: Answer: DESeq2 rerun returns different results
12 months ago ATpoint ★ 5.0k
1
vote
0
replies
1.1k
views
Answer: Answer: Handling biological replicates in DESeq2
12 months ago ATpoint ★ 5.0k
0
votes
1
reply
1.6k
views
Answer: Answer: Volcano plot has many values around zero
12 months ago ATpoint ★ 5.0k
2
votes
1
reply
1.3k
views
Comment: Comment: DESeq Input from Salmon + tximport/tximeta
12 months ago ATpoint ★ 5.0k
0
votes
0
replies
1.6k
views
Comment: Comment: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
12 months ago ATpoint ★ 5.0k
0
votes
0
replies
729
views
Answer: Answer: Average expression of genes across replicates
12 months ago ATpoint ★ 5.0k
0
votes
0
replies
923
views
Answer: Answer: Spike-in normalization method in ATACseq
12 months ago ATpoint ★ 5.0k
0
votes
0
replies
1.8k
views
Comment: Comment: New to Deseq2 - DEG questions / MA plot
13 months ago ATpoint ★ 5.0k
1
vote
1
reply
1.3k
views
Answer: Answer: Analysis of large RNA-Seq Datasets
13 months ago ATpoint ★ 5.0k
0
votes
0
replies
487
views
Answer: Answer: how to extract expression matrix post deseq2
13 months ago ATpoint ★ 5.0k
1
vote
0
replies
865
views
Answer: Answer: Automatically generate contrasts from a model matrix / formula
13 months ago ATpoint ★ 5.0k
1
vote
0
replies
1.3k
views
Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
13 months ago ATpoint ★ 5.0k
0
votes
1
reply
535
views
Answer: Answer: Using Normalized Counts in DESeq2
13 months ago ATpoint ★ 5.0k
0
votes
1
reply
1.5k
views
Comment: Comment: What should be the normalization protocol for RNA seq data for WGCNA?
13 months ago ATpoint ★ 5.0k
1
vote
1
reply
1.5k
views
Answer: Answer: What should be the normalization protocol for RNA seq data for WGCNA?
13 months ago ATpoint ★ 5.0k
0
votes
0
replies
990
views
Comment: Comment: How to control batch effect if Group and batch are same?
13 months ago ATpoint ★ 5.0k
0
votes
0
replies
1.3k
views
Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
13 months ago ATpoint ★ 5.0k
5
votes
1
reply
990
views
Answer: Answer: How to control batch effect if Group and batch are same?
13 months ago ATpoint ★ 5.0k
1
vote
0
replies
671
views
Comment: Comment: Normalization RNA-seq for multiple plates
13 months ago ATpoint ★ 5.0k
1
vote
0
replies
589
views
Answer: Answer: DEseq 2 LFC shrinkage with apeglm in single-cell pseudobulk: strange volcano plo
13 months ago ATpoint ★ 5.0k
0
votes
1
reply
1.8k
views
Answer: Answer: New to Deseq2 - DEG questions / MA plot
13 months ago ATpoint ★ 5.0k
1
vote
1
reply
1.6k
views
Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
14 months ago ATpoint ★ 5.0k
1
vote
1
reply
1.6k
views
Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
14 months ago ATpoint ★ 5.0k
0
votes
1
reply
672
views
Answer: Answer: Questions in Regards to LFC shrinkage in DSeq2
14 months ago ATpoint ★ 5.0k
1
vote
0
replies
818
views
Comment: Comment: Gene filtering in DESeq2
14 months ago ATpoint ★ 5.0k
1
vote
0
replies
488
views
Answer: Answer: Deseq2 - differenc in results
14 months ago ATpoint ★ 5.0k
3
votes
3
replies
939
views
voom does not seem to properly correct for library size
limma
updated 14 months ago by 53k • written 14 months ago by ★ 5.0k
0
votes
0
replies
939
views
Comment: Comment: voom does not seem to properly correct for library size
14 months ago ATpoint ★ 5.0k
0
votes
1
reply
1.1k
views
Answer: Answer: More significant genes after lfcShrink in DEseq2?
14 months ago ATpoint ★ 5.0k
1
vote
1
reply
1.4k
views
Comment: Comment: RNASeq normlization for samples with global shift in gene expression
14 months ago ATpoint ★ 5.0k
2
votes
0
replies
1.5k
views
Answer: Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
15 months ago ATpoint ★ 5.0k
2
votes
1
reply
872
views
Answer: Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
15 months ago ATpoint ★ 5.0k
0
votes
0
replies
1.4k
views
Comment: Comment: DiffBind full library size not reliable
15 months ago ATpoint ★ 5.0k
1
vote
0
replies
1.0k
views
Comment: Comment: Optimizing CPM Calculation for Varied RNA-seq Data
15 months ago ATpoint ★ 5.0k
0
votes
2
replies
1.4k
views
Comment: Comment: DiffBind full library size not reliable
15 months ago ATpoint ★ 5.0k
0
votes
1
reply
1.4k
views
Comment: Comment: DiffBind full library size not reliable
15 months ago ATpoint ★ 5.0k
0
votes
1
reply
1.4k
views
Comment: Comment: DiffBind full library size not reliable
15 months ago ATpoint ★ 5.0k
0
votes
0
replies
1.1k
views
Answer: Answer: Validity of SingleR with very small bulk RNAseq reference
15 months ago ATpoint ★ 5.0k
2
votes
2
replies
2.9k
views
Answer: Answer: Plot PCA with ellipses using ggplot
15 months ago ATpoint ★ 5.0k
0
votes
0
replies
1.3k
views
Comment: Comment: Recount3: PCR duplicates
15 months ago ATpoint ★ 5.0k
0
votes
0
replies
975
views
Comment: Comment: Error when trying to do different pairwise comparisons and lfcshrink than what's
16 months ago ATpoint ★ 5.0k
1,097 results • Page 3 of 22
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6