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Answer: Answer: Ph.D. scholar
13 months ago ATpoint ★ 5.0k
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Comment: Comment: EdgeR Biological CVs
13 months ago ATpoint ★ 5.0k
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1.5k
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Answer: Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
13 months ago ATpoint ★ 5.0k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
13 months ago ATpoint ★ 5.0k
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Comment: Comment: Installation error for Rsamtools.
13 months ago ATpoint ★ 5.0k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
13 months ago ATpoint ★ 5.0k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
13 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: DESeq2 analysis with transcript counts
13 months ago ATpoint ★ 5.0k
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2.1k
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Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
13 months ago ATpoint ★ 5.0k
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867
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Answer: Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
14 months ago ATpoint ★ 5.0k
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1.5k
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Answer: Answer: Standardization of rlog transformed counts before PCA
14 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
14 months ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
14 months ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
14 months ago ATpoint ★ 5.0k
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3.9k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
14 months ago ATpoint ★ 5.0k
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1.6k
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Answer: Answer: RSubread output significantly different from bash Subread output
15 months ago • updated 14 months ago ATpoint ★ 5.0k
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3.9k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
15 months ago ATpoint ★ 5.0k
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3.9k
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Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
15 months ago ATpoint ★ 5.0k
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857
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Comment: Comment: WGCNA with TPM tables
15 months ago ATpoint ★ 5.0k
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490
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Comment: Comment: eRNAs count
15 months ago ATpoint ★ 5.0k
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578
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Comment: Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
15 months ago ATpoint ★ 5.0k
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705
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Answer: Answer: DESeq2 rerun returns different results
15 months ago ATpoint ★ 5.0k
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Answer: Answer: Handling biological replicates in DESeq2
15 months ago ATpoint ★ 5.0k
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1.8k
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Answer: Answer: Volcano plot has many values around zero
16 months ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: DESeq Input from Salmon + tximport/tximeta
16 months ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
16 months ago ATpoint ★ 5.0k
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873
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Answer: Answer: Average expression of genes across replicates
16 months ago ATpoint ★ 5.0k
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1.2k
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Answer: Answer: Spike-in normalization method in ATACseq
16 months ago ATpoint ★ 5.0k
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2.4k
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Comment: Comment: New to Deseq2 - DEG questions / MA plot
16 months ago ATpoint ★ 5.0k
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1.4k
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Answer: Answer: Analysis of large RNA-Seq Datasets
16 months ago ATpoint ★ 5.0k
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567
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Answer: Answer: how to extract expression matrix post deseq2
16 months ago ATpoint ★ 5.0k
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1.4k
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Answer: Answer: Automatically generate contrasts from a model matrix / formula
16 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
16 months ago ATpoint ★ 5.0k
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580
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Answer: Answer: Using Normalized Counts in DESeq2
16 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: What should be the normalization protocol for RNA seq data for WGCNA?
16 months ago ATpoint ★ 5.0k
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1.9k
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Answer: Answer: What should be the normalization protocol for RNA seq data for WGCNA?
16 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: How to control batch effect if Group and batch are same?
17 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
17 months ago ATpoint ★ 5.0k
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1.2k
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Answer: Answer: How to control batch effect if Group and batch are same?
17 months ago ATpoint ★ 5.0k
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799
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Comment: Comment: Normalization RNA-seq for multiple plates
17 months ago ATpoint ★ 5.0k
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638
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Answer: Answer: DEseq 2 LFC shrinkage with apeglm in single-cell pseudobulk: strange volcano plo
17 months ago ATpoint ★ 5.0k
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2.4k
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Answer: Answer: New to Deseq2 - DEG questions / MA plot
17 months ago ATpoint ★ 5.0k
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1
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2.1k
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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
18 months ago ATpoint ★ 5.0k
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2.1k
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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
18 months ago ATpoint ★ 5.0k
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896
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Answer: Answer: Questions in Regards to LFC shrinkage in DSeq2
18 months ago ATpoint ★ 5.0k
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950
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Comment: Comment: Gene filtering in DESeq2
18 months ago ATpoint ★ 5.0k
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552
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Answer: Answer: Deseq2 - differenc in results
18 months ago ATpoint ★ 5.0k
3
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3
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1.1k
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voom does not seem to properly correct for library size
limma
updated 18 months ago by 53k • written 18 months ago by ★ 5.0k
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1.1k
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Comment: Comment: voom does not seem to properly correct for library size
18 months ago ATpoint ★ 5.0k
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1
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1.3k
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Answer: Answer: More significant genes after lfcShrink in DEseq2?
18 months ago ATpoint ★ 5.0k
1,109 results • Page 3 of 23
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