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Answer: Answer: Error when trying to do different pairwise comparisons and lfcshrink than what's
16 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: How to rank DEG for GSEA using DEseq2 result ?
16 months ago ATpoint ★ 5.0k
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547
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Answer: Answer: Run DEXSeq successfully but got a result that padj==1 in all genes
16 months ago ATpoint ★ 5.0k
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585
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Comment: Comment: output from RAIN doesn't look rhythmic
16 months ago ATpoint ★ 5.0k
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611
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Answer: Answer: unreal negative log2fc values
16 months ago ATpoint ★ 5.0k
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1
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973
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Comment: Comment: How to search Pubmed Central or other fulltext literature base using regex?
16 months ago ATpoint ★ 5.0k
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2
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1.4k
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
16 months ago ATpoint ★ 5.0k
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2.2k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
17 months ago ATpoint ★ 5.0k
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752
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Answer: Answer: DESeq2 - vst() - log2FC - no replicates
17 months ago ATpoint ★ 5.0k
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1.7k
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Answer: Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
17 months ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: Create multiple DoparParams with different number of registered cores
17 months ago ATpoint ★ 5.0k
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6
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1.4k
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Create multiple DoparParams with different number of registered cores
BiocParallel
updated 17 months ago by 68k • written 17 months ago by ★ 5.0k
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1.4k
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Comment: Comment: Create multiple DoparParams with different number of registered cores
17 months ago ATpoint ★ 5.0k
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1
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1.2k
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
17 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
17 months ago ATpoint ★ 5.0k
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3.5k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
17 months ago ATpoint ★ 5.0k
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794
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Comment: Comment: When I tried to use the functions from the celldex package to fetch information,
17 months ago ATpoint ★ 5.0k
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3.1k
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Comment: Comment: Issues with installing Bioconductor packages (eg GEOquery)
17 months ago ATpoint ★ 5.0k
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1
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3.1k
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Answer: Answer: Issues with installing Bioconductor packages (eg GEOquery)
17 months ago ATpoint ★ 5.0k
0
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526
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Answer: Answer: How to access the Bioconductor in Windows
17 months ago ATpoint ★ 5.0k
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732
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Comment: Comment: Ploting of normalized counts after batch removal
17 months ago ATpoint ★ 5.0k
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810
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Answer: Answer: Deseq2
17 months ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
17 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: Counter-directional LFC shrinkage
17 months ago ATpoint ★ 5.0k
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2.2k
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
17 months ago ATpoint ★ 5.0k
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962
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Answer: Answer: Normalisation using clinical traits in RNA seq using DESeq2
18 months ago • updated 17 months ago ATpoint ★ 5.0k
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2.2k
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Answer: Answer: Volcano plot of scRNA-seq data not "centered"
18 months ago ATpoint ★ 5.0k
0
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1
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2.1k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
18 months ago ATpoint ★ 5.0k
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1
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2.1k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
18 months ago ATpoint ★ 5.0k
2
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1
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1.2k
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Answer: Answer: Get gene symbols for a set of hg19 coordinates
18 months ago ATpoint ★ 5.0k
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1
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4.7k
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Comment: Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
18 months ago ATpoint ★ 5.0k
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0
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1.0k
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Comment: Comment: unable to access bioconductor packages - qvalue installation failed...
18 months ago ATpoint ★ 5.0k
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1.3k
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Comment: Comment: Slightly different count plots from R and spreadsheet
18 months ago ATpoint ★ 5.0k
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2
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1.5k
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Comment: Comment: all variables in design formula must be columns in colData (Deseq2) error
18 months ago ATpoint ★ 5.0k
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1
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1.5k
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Answer: Answer: all variables in design formula must be columns in colData (Deseq2) error
18 months ago ATpoint ★ 5.0k
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0
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1.4k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
18 months ago ATpoint ★ 5.0k
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1
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1.4k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
18 months ago ATpoint ★ 5.0k
1
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1
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1.4k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
18 months ago ATpoint ★ 5.0k
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1
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1.1k
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Comment: Comment: Problem installing ChAMP on a MacBook
18 months ago ATpoint ★ 5.0k
1
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0
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1.2k
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Comment: Comment: How to correctly adjust for gender in edgeR
18 months ago ATpoint ★ 5.0k
1
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1
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1.4k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
18 months ago ATpoint ★ 5.0k
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621
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Answer: Answer: Differential gene expression analysis results
18 months ago ATpoint ★ 5.0k
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0
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709
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Answer: Answer: normalization using Deseq2
18 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: deseq2 results
18 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
18 months ago ATpoint ★ 5.0k
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3.3k
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Comment: Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
18 months ago ATpoint ★ 5.0k
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1
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1.9k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
18 months ago ATpoint ★ 5.0k
0
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0
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798
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Comment: Comment: Couldn't connect to server while using "pathways"
18 months ago ATpoint ★ 5.0k
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2.2k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
18 months ago ATpoint ★ 5.0k
2
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1
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1.6k
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Answer: Answer: fgsea significant result
18 months ago ATpoint ★ 5.0k
1,097 results • Page 4 of 22
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