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Comment: Comment: DiffBind full library size not reliable
18 months ago ATpoint ★ 5.0k
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Comment: Comment: Optimizing CPM Calculation for Varied RNA-seq Data
18 months ago ATpoint ★ 5.0k
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2
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1.5k
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Comment: Comment: DiffBind full library size not reliable
18 months ago ATpoint ★ 5.0k
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1
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1.5k
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Comment: Comment: DiffBind full library size not reliable
18 months ago ATpoint ★ 5.0k
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1
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1.5k
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Comment: Comment: DiffBind full library size not reliable
18 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: Validity of SingleR with very small bulk RNAseq reference
18 months ago ATpoint ★ 5.0k
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Answer: Answer: Plot PCA with ellipses using ggplot
18 months ago ATpoint ★ 5.0k
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1.4k
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Comment: Comment: Recount3: PCR duplicates
18 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: Error when trying to do different pairwise comparisons and lfcshrink than what's
18 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: Error when trying to do different pairwise comparisons and lfcshrink than what's
18 months ago ATpoint ★ 5.0k
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1.2k
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Answer: Answer: How to rank DEG for GSEA using DEseq2 result ?
18 months ago ATpoint ★ 5.0k
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608
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Answer: Answer: Run DEXSeq successfully but got a result that padj==1 in all genes
18 months ago ATpoint ★ 5.0k
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676
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Comment: Comment: output from RAIN doesn't look rhythmic
18 months ago ATpoint ★ 5.0k
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0
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681
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Answer: Answer: unreal negative log2fc values
19 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: How to search Pubmed Central or other fulltext literature base using regex?
19 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
19 months ago ATpoint ★ 5.0k
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1
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2.7k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
19 months ago ATpoint ★ 5.0k
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843
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Answer: Answer: DESeq2 - vst() - log2FC - no replicates
19 months ago ATpoint ★ 5.0k
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1.9k
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Answer: Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
19 months ago ATpoint ★ 5.0k
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1
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1.7k
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Comment: Comment: Create multiple DoparParams with different number of registered cores
19 months ago ATpoint ★ 5.0k
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6
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1.7k
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Create multiple DoparParams with different number of registered cores
BiocParallel
updated 19 months ago by 68k • written 19 months ago by ★ 5.0k
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Comment: Comment: Create multiple DoparParams with different number of registered cores
19 months ago ATpoint ★ 5.0k
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1
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1.4k
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
19 months ago ATpoint ★ 5.0k
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1
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1.4k
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
19 months ago ATpoint ★ 5.0k
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0
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3.9k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
20 months ago ATpoint ★ 5.0k
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858
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Comment: Comment: When I tried to use the functions from the celldex package to fetch information,
20 months ago ATpoint ★ 5.0k
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3.7k
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Comment: Comment: Issues with installing Bioconductor packages (eg GEOquery)
20 months ago ATpoint ★ 5.0k
0
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1
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3.7k
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Answer: Answer: Issues with installing Bioconductor packages (eg GEOquery)
20 months ago ATpoint ★ 5.0k
0
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0
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583
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Answer: Answer: How to access the Bioconductor in Windows
20 months ago ATpoint ★ 5.0k
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0
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806
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Comment: Comment: Ploting of normalized counts after batch removal
20 months ago ATpoint ★ 5.0k
1
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899
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Answer: Answer: Deseq2
20 months ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
20 months ago ATpoint ★ 5.0k
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1
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1.2k
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Comment: Comment: Counter-directional LFC shrinkage
20 months ago ATpoint ★ 5.0k
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2.5k
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
20 months ago ATpoint ★ 5.0k
0
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1
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1.1k
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Answer: Answer: Normalisation using clinical traits in RNA seq using DESeq2
20 months ago ATpoint ★ 5.0k
0
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1
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2.5k
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Answer: Answer: Volcano plot of scRNA-seq data not "centered"
20 months ago ATpoint ★ 5.0k
0
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1
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2.4k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
20 months ago ATpoint ★ 5.0k
0
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1
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2.4k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
20 months ago ATpoint ★ 5.0k
2
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1
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1.4k
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Answer: Answer: Get gene symbols for a set of hg19 coordinates
20 months ago ATpoint ★ 5.0k
1
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1
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5.4k
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Comment: Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
20 months ago ATpoint ★ 5.0k
1
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0
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1.2k
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Comment: Comment: unable to access bioconductor packages - qvalue installation failed...
20 months ago ATpoint ★ 5.0k
0
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1
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1.4k
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Comment: Comment: Slightly different count plots from R and spreadsheet
20 months ago ATpoint ★ 5.0k
0
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2
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1.8k
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Comment: Comment: all variables in design formula must be columns in colData (Deseq2) error
20 months ago ATpoint ★ 5.0k
0
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1
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1.8k
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Answer: Answer: all variables in design formula must be columns in colData (Deseq2) error
20 months ago ATpoint ★ 5.0k
1
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0
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1.5k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
20 months ago ATpoint ★ 5.0k
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1
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1.5k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
20 months ago ATpoint ★ 5.0k
1
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1
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1.5k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
20 months ago ATpoint ★ 5.0k
0
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1
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1.2k
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Comment: Comment: Problem installing ChAMP on a MacBook
20 months ago ATpoint ★ 5.0k
1
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0
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1.3k
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Comment: Comment: How to correctly adjust for gender in edgeR
20 months ago ATpoint ★ 5.0k
1
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1
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1.5k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
20 months ago ATpoint ★ 5.0k
1,106 results • Page 4 of 23
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