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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
9 months ago ATpoint ★ 4.2k
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978
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Comment: Comment: Getting batch corrected counts after RUVSeq
9 months ago ATpoint ★ 4.2k
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978
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Answer: Answer: Getting batch corrected counts after RUVSeq
9 months ago ATpoint ★ 4.2k
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331
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
9 months ago ATpoint ★ 4.2k
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503
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Answer: Answer: bulk RNA-Seq batch correction
9 months ago ATpoint ★ 4.2k
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597
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Comment: Comment: AAbin vs DNAbin structures
9 months ago ATpoint ★ 4.2k
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1.1k
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Answer: Answer: MACS2 not installing
9 months ago ATpoint ★ 4.2k
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741
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
9 months ago ATpoint ★ 4.2k
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1.2k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
9 months ago ATpoint ★ 4.2k
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531
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
9 months ago ATpoint ★ 4.2k
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1.7k
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Comment: Comment: PCA percent variance DESeq2
9 months ago ATpoint ★ 4.2k
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1.6k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
9 months ago ATpoint ★ 4.2k
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424
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Answer: Answer: Speeding up large scale scRNAseq analyses in R and improve memory
9 months ago ATpoint ★ 4.2k
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Comment: Comment: Protein differential Expression analysis
9 months ago ATpoint ★ 4.2k
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427
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Answer: Answer: TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
10 months ago ATpoint ★ 4.2k
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473
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Answer: Answer: Package "Netboost" is an Unix-only package, how can I install it in R?
10 months ago ATpoint ★ 4.2k
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482
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Answer: Answer: Getting NAs in both p-values (normal and adjusted) in DEseq2
10 months ago ATpoint ★ 4.2k
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1.7k
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Comment: Comment: PCA percent variance DESeq2
10 months ago ATpoint ★ 4.2k
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1.1k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
10 months ago ATpoint ★ 4.2k
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1.1k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
10 months ago ATpoint ★ 4.2k
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2
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1.7k
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Answer: Answer: PCA percent variance DESeq2
10 months ago • updated 9 months ago ATpoint ★ 4.2k
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1.1k
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Answer: Answer: Time-series RNA-seq analysis using DESeq2
10 months ago ATpoint ★ 4.2k
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1.5k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
10 months ago ATpoint ★ 4.2k
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560
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Answer: Answer: Why was the number of DEG different between DESeq results and count by myself us
10 months ago ATpoint ★ 4.2k
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1.5k
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Answer: Answer: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
10 months ago ATpoint ★ 4.2k
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1.5k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
10 months ago ATpoint ★ 4.2k
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821
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
10 months ago ATpoint ★ 4.2k
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753
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Answer: Answer: unable to retrieve certain packages from bioconductor 3.15
10 months ago ATpoint ★ 4.2k
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2
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1.7k
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Comment: Comment: can't open mghp.osn.xsede.org
10 months ago ATpoint ★ 4.2k
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421
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Answer: Answer: FALSE error when checking a pre made sample data
10 months ago ATpoint ★ 4.2k
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1.3k
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Comment: Comment: bulk RNA-seq analysis using R : batch effect : One question concerning Combat-se
10 months ago ATpoint ★ 4.2k
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933
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Answer: Answer: Recommendation for large.n in filterByExpr
10 months ago ATpoint ★ 4.2k
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1.2k
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Answer: Answer: DESeq2 error after installing BiocManager
10 months ago ATpoint ★ 4.2k
1
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933
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Comment: Comment: lfcShrink() and batch effects in DESeq2
10 months ago ATpoint ★ 4.2k
2
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933
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Answer: Answer: lfcShrink() and batch effects in DESeq2
10 months ago ATpoint ★ 4.2k
2
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0
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510
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Answer: Answer: Zero counts for all samples for all genes downloaded from recount3
10 months ago ATpoint ★ 4.2k
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561
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Answer: Answer: Inquiring about Comparative Analysis without Replicates in NOIseq R Package
10 months ago ATpoint ★ 4.2k
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1.1k
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Comment: Comment: Difference between DESeqDataSetFromMatrix() function and DESeq() function
10 months ago ATpoint ★ 4.2k
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2
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474
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Answer: Answer: DESeq2: full model matrix is less than full rank
10 months ago ATpoint ★ 4.2k
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1.1k
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Answer: Answer: Difference between DESeqDataSetFromMatrix() function and DESeq() function
10 months ago ATpoint ★ 4.2k
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1
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1.1k
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Answer: Answer: DESeq2 discrepancy in log2FC significance and normalized counts significance
10 months ago ATpoint ★ 4.2k
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770
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Comment: Comment: insufficient unique points for computing knee/inflection points
10 months ago ATpoint ★ 4.2k
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456
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Answer: Answer: If highly-expressed genes are upregulated, what happens to genes with lower expr
10 months ago ATpoint ★ 4.2k
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770
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Comment: Comment: insufficient unique points for computing knee/inflection points
10 months ago ATpoint ★ 4.2k
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836
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
10 months ago ATpoint ★ 4.2k
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643
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Comment: Comment: DESeq differential expression results are too stringet. How to relax my criteria
10 months ago ATpoint ★ 4.2k
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643
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Answer: Answer: DESeq differential expression results are too stringet. How to relax my criteria
10 months ago ATpoint ★ 4.2k
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1
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1.2k
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Answer: Answer: Same few genes repeated in DESeq2 Results
10 months ago ATpoint ★ 4.2k
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1.2k
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Comment: Comment: Same few genes repeated in DESeq2 Results
10 months ago ATpoint ★ 4.2k
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1
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1.2k
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Comment: Comment: Same few genes repeated in DESeq2 Results
10 months ago ATpoint ★ 4.2k
936 results • Page 5 of 19
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