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Answer: Answer: Differential expression analysis with only FPKM matrix available from total newb
9 months ago ATpoint ★ 4.2k
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
9 months ago ATpoint ★ 4.2k
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Answer: Answer: Software Compatibility Issue Between phyloseq and lme4 Packages
9 months ago ATpoint ★ 4.2k
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Answer: Answer: SingleR Label.Ont
9 months ago ATpoint ★ 4.2k
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Answer: Answer: TPM from STAR mapped counts
9 months ago ATpoint ★ 4.2k
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340
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Answer: Answer: Missing genes in the differentially expressed gene list which otherwise are expe
9 months ago ATpoint ★ 4.2k
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Comment: Comment: Getting batch corrected counts after RUVSeq
9 months ago ATpoint ★ 4.2k
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
9 months ago ATpoint ★ 4.2k
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Comment: Comment: Getting batch corrected counts after RUVSeq
9 months ago ATpoint ★ 4.2k
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Answer: Answer: Getting batch corrected counts after RUVSeq
9 months ago ATpoint ★ 4.2k
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
9 months ago ATpoint ★ 4.2k
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Answer: Answer: bulk RNA-Seq batch correction
9 months ago ATpoint ★ 4.2k
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Comment: Comment: AAbin vs DNAbin structures
9 months ago ATpoint ★ 4.2k
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Answer: Answer: MACS2 not installing
9 months ago ATpoint ★ 4.2k
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
9 months ago ATpoint ★ 4.2k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
9 months ago ATpoint ★ 4.2k
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
10 months ago ATpoint ★ 4.2k
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Comment: Comment: PCA percent variance DESeq2
10 months ago ATpoint ★ 4.2k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
10 months ago ATpoint ★ 4.2k
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Answer: Answer: Speeding up large scale scRNAseq analyses in R and improve memory
10 months ago ATpoint ★ 4.2k
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Comment: Comment: Protein differential Expression analysis
10 months ago ATpoint ★ 4.2k
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Answer: Answer: TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
10 months ago ATpoint ★ 4.2k
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Answer: Answer: Package "Netboost" is an Unix-only package, how can I install it in R?
10 months ago ATpoint ★ 4.2k
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Answer: Answer: Getting NAs in both p-values (normal and adjusted) in DEseq2
10 months ago ATpoint ★ 4.2k
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Comment: Comment: PCA percent variance DESeq2
10 months ago ATpoint ★ 4.2k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
10 months ago ATpoint ★ 4.2k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
10 months ago ATpoint ★ 4.2k
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Answer: Answer: PCA percent variance DESeq2
10 months ago ATpoint ★ 4.2k
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Answer: Answer: Time-series RNA-seq analysis using DESeq2
10 months ago ATpoint ★ 4.2k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
10 months ago ATpoint ★ 4.2k
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Answer: Answer: Why was the number of DEG different between DESeq results and count by myself us
10 months ago ATpoint ★ 4.2k
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Answer: Answer: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
10 months ago ATpoint ★ 4.2k
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1.5k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
10 months ago ATpoint ★ 4.2k
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
10 months ago ATpoint ★ 4.2k
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762
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Answer: Answer: unable to retrieve certain packages from bioconductor 3.15
10 months ago ATpoint ★ 4.2k
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Comment: Comment: can't open mghp.osn.xsede.org
10 months ago ATpoint ★ 4.2k
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Answer: Answer: FALSE error when checking a pre made sample data
10 months ago ATpoint ★ 4.2k
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Comment: Comment: bulk RNA-seq analysis using R : batch effect : One question concerning Combat-se
10 months ago ATpoint ★ 4.2k
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939
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Answer: Answer: Recommendation for large.n in filterByExpr
10 months ago ATpoint ★ 4.2k
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1.2k
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Answer: Answer: DESeq2 error after installing BiocManager
10 months ago ATpoint ★ 4.2k
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944
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Comment: Comment: lfcShrink() and batch effects in DESeq2
10 months ago ATpoint ★ 4.2k
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944
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Answer: Answer: lfcShrink() and batch effects in DESeq2
10 months ago ATpoint ★ 4.2k
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518
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Answer: Answer: Zero counts for all samples for all genes downloaded from recount3
10 months ago ATpoint ★ 4.2k
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569
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Answer: Answer: Inquiring about Comparative Analysis without Replicates in NOIseq R Package
10 months ago ATpoint ★ 4.2k
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Comment: Comment: Difference between DESeqDataSetFromMatrix() function and DESeq() function
10 months ago ATpoint ★ 4.2k
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482
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Answer: Answer: DESeq2: full model matrix is less than full rank
10 months ago ATpoint ★ 4.2k
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Answer: Answer: Difference between DESeqDataSetFromMatrix() function and DESeq() function
10 months ago ATpoint ★ 4.2k
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Answer: Answer: DESeq2 discrepancy in log2FC significance and normalized counts significance
10 months ago ATpoint ★ 4.2k
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780
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Comment: Comment: insufficient unique points for computing knee/inflection points
10 months ago ATpoint ★ 4.2k
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464
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Answer: Answer: If highly-expressed genes are upregulated, what happens to genes with lower expr
11 months ago ATpoint ★ 4.2k
943 results • Page 5 of 19
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