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Comment: Comment: Differences in differential analysis methods for RNA-Seq
18 months ago ATpoint ★ 5.0k
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
18 months ago ATpoint ★ 5.0k
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
18 months ago ATpoint ★ 5.0k
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
18 months ago ATpoint ★ 5.0k
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Answer: Answer: putting my own expression data in deseq2
18 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
18 months ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
18 months ago ATpoint ★ 5.0k
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Answer: Answer: ATACseq merge peaks
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
19 months ago ATpoint ★ 5.0k
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
19 months ago ATpoint ★ 5.0k
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
19 months ago ATpoint ★ 5.0k
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Answer: Answer: Different Shrunk Log2FC according with reference
19 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
19 months ago ATpoint ★ 5.0k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Input Question for deseq.r
19 months ago ATpoint ★ 5.0k
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Deseq2 Rlog transformation
19 months ago ATpoint ★ 5.0k
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Not fully paired differential gene expression analysis
19 months ago ATpoint ★ 5.0k
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Comment: Comment: [DiffBind] Obtaining normalization factors
19 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
19 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
19 months ago ATpoint ★ 5.0k
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1.6k
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
19 months ago ATpoint ★ 5.0k
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Answer: Answer: Can you find the correct transcript in scRNA seq data
19 months ago ATpoint ★ 5.0k
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Comment: Comment: Not fully paired differential gene expression analysis
19 months ago ATpoint ★ 5.0k
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915
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
19 months ago ATpoint ★ 5.0k
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Comment: Comment: PCA of different bacterial species
20 months ago ATpoint ★ 5.0k
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987
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
20 months ago ATpoint ★ 5.0k
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
20 months ago ATpoint ★ 5.0k
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1.1k
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
20 months ago ATpoint ★ 5.0k
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
20 months ago ATpoint ★ 5.0k
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930
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Comment: Comment: Help with Complex DESeq2 Design
20 months ago ATpoint ★ 5.0k
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759
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Comment: Comment: Visium RNA
20 months ago ATpoint ★ 5.0k
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Comment: Comment: Fail BiocManager::install(version='3.12')
20 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
20 months ago ATpoint ★ 5.0k
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914
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
20 months ago ATpoint ★ 5.0k
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3.0k
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Answer: Answer: RNA sequencing raw counts gene filtering
20 months ago ATpoint ★ 5.0k
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582
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Answer: Answer: i'm not getting any differentially expressed genes.
20 months ago ATpoint ★ 5.0k
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807
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
20 months ago ATpoint ★ 5.0k
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515
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Answer: Answer: Perform PCA for sample clustering using DESeq2
20 months ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Rcpp compilation error
20 months ago ATpoint ★ 5.0k
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
20 months ago ATpoint ★ 5.0k
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Comment: Comment: DESeq and SVA for batch effect
20 months ago ATpoint ★ 5.0k
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660
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Answer: Answer: Unusually large fold-changes in Deseq2 results
20 months ago ATpoint ★ 5.0k
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1.0k
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Comment: Comment: Factor vs Character in design
20 months ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
20 months ago ATpoint ★ 5.0k
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993
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
20 months ago ATpoint ★ 5.0k
1,097 results • Page 5 of 22
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