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2
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0
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867
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Answer:
Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
23 months ago
ATpoint
★ 5.0k
1
vote
0
replies
556
views
Answer:
Answer: Perform PCA for sample clustering using DESeq2
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.3k
views
Comment:
Comment: Rcpp compilation error
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
991
views
Answer:
Answer: DESeq2 for pseudobulk analysis of scCITE-seq
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.7k
views
Comment:
Comment: DESeq and SVA for batch effect
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
741
views
Answer:
Answer: Unusually large fold-changes in Deseq2 results
23 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.2k
views
Comment:
Comment: Factor vs Character in design
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.2k
views
Answer:
Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
23 months ago
ATpoint
★ 5.0k
1
vote
1
reply
1.0k
views
Comment:
Comment: Further clarification of unbalanced group sizes DESeq2
23 months ago
ATpoint
★ 5.0k
0
votes
1
reply
1.0k
views
Answer:
Answer: Further clarification of unbalanced group sizes DESeq2
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
821
views
Comment:
Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
23 months ago
ATpoint
★ 5.0k
0
votes
1
reply
908
views
Comment:
Comment: problem in installing the new version of bioconductor
23 months ago
ATpoint
★ 5.0k
1
vote
0
replies
800
views
Answer:
Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: vst transformation and zero counts
23 months ago
ATpoint
★ 5.0k
1
vote
1
reply
2.1k
views
Comment:
Comment: Average biological replicates in RNA-seq
23 months ago
ATpoint
★ 5.0k
0
votes
2
replies
2.1k
views
Comment:
Comment: Average biological replicates in RNA-seq
23 months ago
ATpoint
★ 5.0k
2
votes
1
reply
2.1k
views
Answer:
Answer: Average biological replicates in RNA-seq
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
519
views
Answer:
Answer: Problems with filtering DESeq Results (log2fold change)
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
472
views
Answer:
Answer: Inconsistency in DESeq2 Log fold change
23 months ago
ATpoint
★ 5.0k
0
votes
0
replies
805
views
Answer:
Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
23 months ago
ATpoint
★ 5.0k
1
vote
1
reply
1.8k
views
Comment:
Comment: How do you post on this forum?
24 months ago
ATpoint
★ 5.0k
0
votes
0
replies
1.4k
views
Comment:
Comment: WGCNA | plotDendroAndColors ERROR
24 months ago
ATpoint
★ 5.0k
2
votes
1
reply
1.8k
views
Answer:
Answer: Graphing DEseq2 Normalized Counts using ggplot2
24 months ago
ATpoint
★ 5.0k
0
votes
0
replies
14k
views
Comment:
Comment: GSEA many significant gene sets despite no differentially expressed genes
24 months ago
ATpoint
★ 5.0k
0
votes
1
reply
957
views
Comment:
Comment: DESeq2 nomalize value
24 months ago
ATpoint
★ 5.0k
0
votes
1
reply
957
views
Answer:
Answer: DESeq2 nomalize value
24 months ago
ATpoint
★ 5.0k
0
votes
1
reply
918
views
Answer:
Answer: Cross-species analysis using DESeq2 - size factor computation
2.0 years ago
ATpoint
★ 5.0k
0
votes
0
replies
1.2k
views
Comment:
Comment: WGCNA Soft Power
2.0 years ago
ATpoint
★ 5.0k
0
votes
1
reply
1.7k
views
Comment:
Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
2.0 years ago
ATpoint
★ 5.0k
0
votes
0
replies
1.6k
views
Comment:
Comment: Batch-resolved visualization after RUVg normalization?
2.1 years ago
ATpoint
★ 5.0k
1
vote
2
replies
1.6k
views
Comment:
Comment: Batch-resolved visualization after RUVg normalization?
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
1.6k
views
Answer:
Answer: scran package: quickCluster and calculateSumFactors parallelization
2.1 years ago • updated 2.0 years ago
ATpoint
★ 5.0k
0
votes
0
replies
704
views
Comment:
Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
2.1 years ago
ATpoint
★ 5.0k
0
votes
0
replies
2.1k
views
Comment:
Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
1.1k
views
Comment:
Comment: DESeq2 Normalization for QC Samples
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
2.1k
views
Comment:
Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
2.1 years ago
ATpoint
★ 5.0k
2
votes
1
reply
4.3k
views
Answer:
Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
3.0k
views
Comment:
Comment: Bioconductor installation
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
2.1k
views
Answer:
Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
2.1 years ago
ATpoint
★ 5.0k
0
votes
0
replies
1.2k
views
Comment:
Comment: DESeq with multiple condition
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
1.2k
views
Answer:
Answer: DESeq with multiple condition
2.1 years ago
ATpoint
★ 5.0k
0
votes
0
replies
2.0k
views
Comment:
Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
2.1 years ago
ATpoint
★ 5.0k
1
vote
0
replies
1.0k
views
Answer:
Answer: Deseq2 -Model matrix not full rank error: A complex case
2.1 years ago
ATpoint
★ 5.0k
2
votes
1
reply
1.6k
views
Answer:
Answer: lfcSE always positive. Does this make sense?
2.1 years ago
ATpoint
★ 5.0k
1
vote
1
reply
1.3k
views
Answer:
Answer: Read Count Normalisation and validation of analysis
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
2.0k
views
Answer:
Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
2.1 years ago
ATpoint
★ 5.0k
1
vote
0
replies
1.2k
views
Answer:
Answer: DESeq2: the model matrix is not full rank issue
2.1 years ago
ATpoint
★ 5.0k
0
votes
0
replies
2.8k
views
Comment:
Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
2.1 years ago
ATpoint
★ 5.0k
0
votes
1
reply
2.8k
views
Answer:
Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
2.1 years ago
ATpoint
★ 5.0k
1
vote
0
replies
1.3k
views
Comment:
Comment: Different genes expression with limma
2.1 years ago
ATpoint
★ 5.0k
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