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2
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867
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
23 months ago ATpoint ★ 5.0k
1
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556
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Answer: Answer: Perform PCA for sample clustering using DESeq2
23 months ago ATpoint ★ 5.0k
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1.3k
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Comment: Comment: Rcpp compilation error
23 months ago ATpoint ★ 5.0k
0
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0
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991
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
23 months ago ATpoint ★ 5.0k
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1.7k
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Comment: Comment: DESeq and SVA for batch effect
23 months ago ATpoint ★ 5.0k
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741
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Answer: Answer: Unusually large fold-changes in Deseq2 results
23 months ago ATpoint ★ 5.0k
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1
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1.2k
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Comment: Comment: Factor vs Character in design
23 months ago ATpoint ★ 5.0k
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1.2k
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
23 months ago ATpoint ★ 5.0k
1
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1.0k
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
23 months ago ATpoint ★ 5.0k
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1
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1.0k
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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
23 months ago ATpoint ★ 5.0k
0
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0
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821
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Comment: Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
23 months ago ATpoint ★ 5.0k
0
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1
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908
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Comment: Comment: problem in installing the new version of bioconductor
23 months ago ATpoint ★ 5.0k
1
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0
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800
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
23 months ago ATpoint ★ 5.0k
0
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0
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1.1k
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Comment: Comment: vst transformation and zero counts
23 months ago ATpoint ★ 5.0k
1
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1
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2.1k
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Comment: Comment: Average biological replicates in RNA-seq
23 months ago ATpoint ★ 5.0k
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2
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2.1k
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Comment: Comment: Average biological replicates in RNA-seq
23 months ago ATpoint ★ 5.0k
2
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1
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2.1k
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Answer: Answer: Average biological replicates in RNA-seq
23 months ago ATpoint ★ 5.0k
0
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0
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519
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
23 months ago ATpoint ★ 5.0k
0
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0
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472
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Answer: Answer: Inconsistency in DESeq2 Log fold change
23 months ago ATpoint ★ 5.0k
0
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0
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805
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
23 months ago ATpoint ★ 5.0k
1
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1
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1.8k
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Comment: Comment: How do you post on this forum?
24 months ago ATpoint ★ 5.0k
0
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0
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1.4k
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
24 months ago ATpoint ★ 5.0k
2
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1
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1.8k
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
24 months ago ATpoint ★ 5.0k
0
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0
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14k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
24 months ago ATpoint ★ 5.0k
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1
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957
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Comment: Comment: DESeq2 nomalize value
24 months ago ATpoint ★ 5.0k
0
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1
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957
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Answer: Answer: DESeq2 nomalize value
24 months ago ATpoint ★ 5.0k
0
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1
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918
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
2.0 years ago ATpoint ★ 5.0k
0
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0
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1.2k
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Comment: Comment: WGCNA Soft Power
2.0 years ago ATpoint ★ 5.0k
0
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1
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1.7k
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
2.0 years ago ATpoint ★ 5.0k
0
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0
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1.6k
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
2.1 years ago ATpoint ★ 5.0k
1
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2
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1.6k
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
2.1 years ago ATpoint ★ 5.0k
0
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1
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1.6k
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
2.1 years ago • updated 2.0 years ago ATpoint ★ 5.0k
0
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0
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704
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Comment: Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
2.1 years ago ATpoint ★ 5.0k
0
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0
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2.1k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
2.1 years ago ATpoint ★ 5.0k
0
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1
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1.1k
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Comment: Comment: DESeq2 Normalization for QC Samples
2.1 years ago ATpoint ★ 5.0k
0
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1
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2.1k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
2.1 years ago ATpoint ★ 5.0k
2
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1
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4.3k
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
2.1 years ago ATpoint ★ 5.0k
0
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1
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3.0k
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Comment: Comment: Bioconductor installation
2.1 years ago ATpoint ★ 5.0k
0
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1
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2.1k
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
2.1 years ago ATpoint ★ 5.0k
0
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0
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1.2k
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Comment: Comment: DESeq with multiple condition
2.1 years ago ATpoint ★ 5.0k
0
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1
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1.2k
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Answer: Answer: DESeq with multiple condition
2.1 years ago ATpoint ★ 5.0k
0
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0
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2.0k
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Comment: Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
2.1 years ago ATpoint ★ 5.0k
1
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0
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1.0k
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Answer: Answer: Deseq2 -Model matrix not full rank error: A complex case
2.1 years ago ATpoint ★ 5.0k
2
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1
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1.6k
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Answer: Answer: lfcSE always positive. Does this make sense?
2.1 years ago ATpoint ★ 5.0k
1
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1
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1.3k
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Answer: Answer: Read Count Normalisation and validation of analysis
2.1 years ago ATpoint ★ 5.0k
0
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1
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2.0k
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
2.1 years ago ATpoint ★ 5.0k
1
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0
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1.2k
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Answer: Answer: DESeq2: the model matrix is not full rank issue
2.1 years ago ATpoint ★ 5.0k
0
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0
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2.8k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
2.1 years ago ATpoint ★ 5.0k
0
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1
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2.8k
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
2.1 years ago ATpoint ★ 5.0k
1
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0
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1.3k
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Comment: Comment: Different genes expression with limma
2.1 years ago ATpoint ★ 5.0k
1,106 results • Page 6 of 23
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