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Answer: Answer: Running DESeq on normalized data
2.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Inconsistent results in DiffBind
2.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Can't download Bioconductor
2.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
2.1 years ago ATpoint ★ 5.0k
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
2.1 years ago ATpoint ★ 5.0k
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Comment: Comment: JoinLayers function for Seurat Object for annotation with SingleR
2.1 years ago ATpoint ★ 5.0k
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Comment: Comment: DESeq2 : stat or lfcshrink for GSEA analysis
2.1 years ago ATpoint ★ 5.0k
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Answer: Answer: WGCNA documentation not available
2.1 years ago ATpoint ★ 5.0k
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2.1k
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Answer: Answer: ScRNAseq analysis scran :: quickcluster Error
2.1 years ago ATpoint ★ 5.0k
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931
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Comment: Comment: DiffBind getting Fold values of near 0
2.1 years ago ATpoint ★ 5.0k
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4.8k
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Answer: Answer: SingleR annotation of several slots/patients
2.1 years ago ATpoint ★ 5.0k
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1.9k
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Answer: Answer: How does Deseq2 deal with the row with zero when calculating size factors
2.1 years ago ATpoint ★ 5.0k
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1.9k
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Comment: Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
2.2 years ago ATpoint ★ 5.0k
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1.0k
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Answer: Answer: Differential gene expression analysis
2.2 years ago ATpoint ★ 5.0k
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1.0k
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Comment: Comment: bam or VCF files from GSE75010
2.2 years ago ATpoint ★ 5.0k
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2.8k
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Answer: Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
2.2 years ago ATpoint ★ 5.0k
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873
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Answer: Answer: WGCNA less samples
2.2 years ago ATpoint ★ 5.0k
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2.3k
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Comment: Comment: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
2.2 years ago ATpoint ★ 5.0k
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2.3k
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Answer: Answer: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
2.2 years ago ATpoint ★ 5.0k
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1.6k
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Answer: Answer: DESeq2 estimateSizeFactors iterate takes too long
2.2 years ago ATpoint ★ 5.0k
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2.8k
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Answer: Answer: How to find stop codons for a list of genes
2.2 years ago ATpoint ★ 5.0k
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Comment: Comment: Fail to annotate chromosome data to single cell sequencing data obtained from ce
2.2 years ago ATpoint ★ 5.0k
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Comment: Comment: Error when Installing BioConductor Package ('affy')
2.2 years ago ATpoint ★ 5.0k
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611
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Answer: Answer: DESeq2 design with unbalance data and a multifactor design
2.2 years ago ATpoint ★ 5.0k
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3.4k
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Comment: Comment: trying to add SingleR label to Seurat Object fails
2.2 years ago ATpoint ★ 5.0k
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Comment: Comment: scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by pa
2.2 years ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: WGCNA tutorial docs needed: Horvath Lab site down
2.2 years ago ATpoint ★ 5.0k
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2.0k
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Answer: Answer: weird volcano plot
2.2 years ago ATpoint ★ 5.0k
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2.0k
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Comment: Comment: weird volcano plot
2.2 years ago ATpoint ★ 5.0k
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2.3k
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Comment: Comment: DESeq2 unable to handle large count values
2.2 years ago ATpoint ★ 5.0k
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2.8k
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Answer: Answer: SparseArray unable to install on Bioc 3.18
2.2 years ago ATpoint ★ 5.0k
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1.3k
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Comment: Comment: rnaSeqGene workflow not available in Bioconductor 3.18
2.2 years ago ATpoint ★ 5.0k
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929
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Comment: Comment: DESeq2: FPMs varying based on sample groups used
2.2 years ago ATpoint ★ 5.0k
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2.9k
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Answer: Answer: MA plot for DESEq2 analysis
2.2 years ago ATpoint ★ 5.0k
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625
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Answer: Answer: DESeqResults object -> extract statistics results with rownames (gene)
2.2 years ago ATpoint ★ 5.0k
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4.7k
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Comment: Comment: Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu
2.2 years ago ATpoint ★ 5.0k
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929
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Answer: Answer: DESeq2: FPMs varying based on sample groups used
2.2 years ago ATpoint ★ 5.0k
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1
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1.7k
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
2.2 years ago ATpoint ★ 5.0k
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3
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2.5k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
2.2 years ago ATpoint ★ 5.0k
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2
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1.6k
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Comment: Comment: Mfuzz package loading issues
2.2 years ago ATpoint ★ 5.0k
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1
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2.5k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
2.2 years ago ATpoint ★ 5.0k
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1
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1.1k
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Comment: Comment: can't update bioconductor 3.18
2.2 years ago ATpoint ★ 5.0k
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1
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2.4k
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Answer: Answer: DESeq2 Normalization with 4 Groups
2.2 years ago ATpoint ★ 5.0k
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1.8k
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Comment: Comment: [Bug] Segfault in edgeR::cpm
2.3 years ago ATpoint ★ 5.0k
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2.4k
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Answer: Answer: choosing rank for GSEA
2.3 years ago ATpoint ★ 5.0k
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1.2k
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Comment: Comment: Duplicated expression values?
2.3 years ago ATpoint ★ 5.0k
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2.0k
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Answer: Answer: Using dplyr commands with DataFrame objects
2.3 years ago ATpoint ★ 5.0k
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1
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1.2k
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Answer: Answer: Differential Expression Cutoffs for n = 1
2.3 years ago ATpoint ★ 5.0k
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0
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947
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Comment: Comment: edgeR: Time course RNA-seq experiments
2.3 years ago ATpoint ★ 5.0k
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2
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1.7k
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Answer: Answer: DESeq2: Design model includes sex but only one female
2.3 years ago ATpoint ★ 5.0k
1,105 results • Page 7 of 23
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