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Answer:
Answer: Remove duplicate genera in DEseq output?
16 months ago
ATpoint
★ 4.4k
0
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0
replies
896
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Comment:
Comment: Recount3: PCR duplicates
16 months ago
ATpoint
★ 4.4k
1
vote
1
reply
740
views
Answer:
Answer: Normalized counts from LRT or Wald test?
16 months ago
ATpoint
★ 4.4k
2
votes
0
replies
703
views
Answer:
Answer: DESeq2 or edgeR for Presence and Absence of Proteins
16 months ago
ATpoint
★ 4.4k
1
vote
0
replies
4.4k
views
Comment:
Comment: Visualization of negative log CPM values
16 months ago
ATpoint
★ 4.4k
0
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1
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4.4k
views
Comment:
Comment: Visualization of negative log CPM values
16 months ago
ATpoint
★ 4.4k
0
votes
1
reply
695
views
Answer:
Answer: DoparParam() execution fails when foreach() works
16 months ago
ATpoint
★ 4.4k
0
votes
1
reply
1.1k
views
Answer:
Answer: Nanostring data differential expression analysis: limma or DESeq2?
16 months ago
ATpoint
★ 4.4k
0
votes
0
replies
678
views
Answer:
Answer: how to solve this error
16 months ago
ATpoint
★ 4.4k
0
votes
1
reply
1.2k
views
Comment:
Comment: How to update a package at Bioconductor
16 months ago
ATpoint
★ 4.4k
0
votes
0
replies
2.1k
views
Comment:
Comment: Installing densvis on a Singularity container
16 months ago
ATpoint
★ 4.4k
1
vote
1
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1.2k
views
Answer:
Answer: Subsetting DESeq data set to compare treatments within one group (multi-group ex
16 months ago
ATpoint
★ 4.4k
0
votes
1
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2.2k
views
Comment:
Comment: optimHess problem in apeglm/DESeq2
16 months ago
ATpoint
★ 4.4k
0
votes
0
replies
755
views
Answer:
Answer: Docker usage with Trio Bioconductor Package
16 months ago
ATpoint
★ 4.4k
1
vote
0
replies
525
views
Answer:
Answer: How to determine if any samples are outliers in PCA? What is the criteria?
16 months ago
ATpoint
★ 4.4k
0
votes
1
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2.2k
views
Comment:
Comment: optimHess problem in apeglm/DESeq2
16 months ago
ATpoint
★ 4.4k
2
votes
7
replies
2.2k
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optimHess problem in apeglm/DESeq2
DESeq2
apeglm
updated 16 months ago by
Michael Love
42k • written 16 months ago by
ATpoint
★ 4.4k
3
votes
0
replies
948
views
Answer:
Answer: 'Seurat' package
16 months ago
ATpoint
★ 4.4k
0
votes
0
replies
534
views
Answer:
Answer: DESeq2: Comparison between 1 test sample with 1 control sample
16 months ago
ATpoint
★ 4.4k
0
votes
1
reply
2.2k
views
Comment:
Comment: lfcshrink error DESeq2
16 months ago
ATpoint
★ 4.4k
0
votes
1
reply
631
views
Answer:
Answer: Deseq2 design
16 months ago
ATpoint
★ 4.4k
0
votes
1
reply
2.2k
views
Comment:
Comment: lfcshrink error DESeq2
16 months ago
ATpoint
★ 4.4k
0
votes
0
replies
1.3k
views
Comment:
Comment: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
17 months ago
ATpoint
★ 4.4k
1
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1
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1.3k
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Answer:
Answer: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
17 months ago
ATpoint
★ 4.4k
1
vote
0
replies
698
views
Comment:
Comment: load failed for ‘DESeq2’
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
632
views
Comment:
Comment: WGCNA for one perturbation time series (pooled from two independent replicates)?
17 months ago
ATpoint
★ 4.4k
1
vote
1
reply
1.4k
views
Answer:
Answer: failed to use tximport for creating count matrix from kallisto
17 months ago
ATpoint
★ 4.4k
0
votes
1
reply
1.5k
views
Answer:
Answer: model matrix not full rank
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
585
views
Comment:
Comment: ANOVA-like testing for bulkRNAseq with three conditions with Wald test
17 months ago
ATpoint
★ 4.4k
1
vote
1
reply
620
views
Answer:
Answer: Different regions for normalisation
17 months ago
ATpoint
★ 4.4k
1
vote
0
replies
642
views
Comment:
Comment: RNA seq with edgeR with several factors
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
575
views
Answer:
Answer: Performing pair-wise comparisons for smaller p value analyzing time series data
17 months ago
ATpoint
★ 4.4k
1
vote
0
replies
13k
views
Comment:
Comment: GSEA preranked analysis downstream of DEseq2
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
1.2k
views
Comment:
Comment: Combine RNA-seq
17 months ago
ATpoint
★ 4.4k
0
votes
1
reply
1.2k
views
Answer:
Answer: Combine RNA-seq
17 months ago
ATpoint
★ 4.4k
1
vote
0
replies
595
views
Answer:
Answer: RNA-seq data collected at differnt time points
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
4.2k
views
Answer:
Answer: package ‘Bioconductor’ is not available for Bioconductor version '3.16'
17 months ago
ATpoint
★ 4.4k
0
votes
1
reply
1.1k
views
Answer:
Answer: tximport error
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
756
views
Comment:
Comment: WGCNA problem
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
986
views
Comment:
Comment: fc value in ggmaplot does not correspond to the real lfc value on the plot
17 months ago
ATpoint
★ 4.4k
1
vote
1
reply
986
views
Answer:
Answer: fc value in ggmaplot does not correspond to the real lfc value on the plot
17 months ago
ATpoint
★ 4.4k
1
vote
0
replies
1.1k
views
Comment:
Comment: calculate distance to a certain sequence in one gene
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
417
views
Comment:
Comment: Package requires binary executable from external software?
17 months ago
ATpoint
★ 4.4k
0
votes
1
reply
987
views
Comment:
Comment: Tximeta error in analysis of downloaded data
17 months ago
ATpoint
★ 4.4k
1
vote
1
reply
1.6k
views
Answer:
Answer: Speedglm dependency issue?
17 months ago
ATpoint
★ 4.4k
1
vote
1
reply
1.8k
views
Comment:
Comment: How to get TPM / FPKM after batch correction with DESeq2?
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
570
views
Comment:
Comment: Sample expression calculation in rna seq
17 months ago
ATpoint
★ 4.4k
1
vote
1
reply
1.8k
views
Answer:
Answer: How to get TPM / FPKM after batch correction with DESeq2?
17 months ago
ATpoint
★ 4.4k
2
votes
1
reply
1.2k
views
Answer:
Answer: Error in checkFullRank(modelMatrix)
17 months ago
ATpoint
★ 4.4k
0
votes
0
replies
734
views
Comment:
Comment: Down weighing an outlier in DESeq2 ?
17 months ago
ATpoint
★ 4.4k
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