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Answer: Answer: Biostrings error at retrieving protein sequences
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Extract LRT results for each comparison
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: ComBat_seq function in sva package does not return a matrix
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Batch effect adjust in model matrix
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: DataFrame Construction With Non-standard Column
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: DeSeq2 design fails (full model matrix is less than full rank)
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Adding chromosome numbers to the respective gene ids of DESeq2 output file
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: DataFrame Construction With Non-standard Column
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: TxDb.Dmelanogaster.UCSC.dm3.ensGene
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Differential expression analysis with only FPKM matrix available from total newb
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Software Compatibility Issue Between phyloseq and lme4 Packages
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: SingleR Label.Ont
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: TPM from STAR mapped counts
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Missing genes in the differentially expressed gene list which otherwise are expe
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: Getting batch corrected counts after RUVSeq
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: Getting batch corrected counts after RUVSeq
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Getting batch corrected counts after RUVSeq
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: bulk RNA-Seq batch correction
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: AAbin vs DNAbin structures
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: MACS2 not installing
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
2.3 years ago ATpoint ★ 5.0k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
2.3 years ago ATpoint ★ 5.0k
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3.4k
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Comment: Comment: PCA percent variance DESeq2
2.3 years ago ATpoint ★ 5.0k
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4.5k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
2.3 years ago ATpoint ★ 5.0k
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Answer: Answer: Speeding up large scale scRNAseq analyses in R and improve memory
2.4 years ago ATpoint ★ 5.0k
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4.1k
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Comment: Comment: Protein differential Expression analysis
2.4 years ago ATpoint ★ 5.0k
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866
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Answer: Answer: TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
2.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Package "Netboost" is an Unix-only package, how can I install it in R?
2.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Getting NAs in both p-values (normal and adjusted) in DEseq2
2.4 years ago ATpoint ★ 5.0k
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3.4k
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Comment: Comment: PCA percent variance DESeq2
2.4 years ago ATpoint ★ 5.0k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
2.4 years ago ATpoint ★ 5.0k
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3.6k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
2.4 years ago ATpoint ★ 5.0k
1
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2
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3.4k
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Answer: Answer: PCA percent variance DESeq2
2.4 years ago • updated 2.3 years ago ATpoint ★ 5.0k
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1
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3.6k
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Answer: Answer: Time-series RNA-seq analysis using DESeq2
2.4 years ago ATpoint ★ 5.0k
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3.7k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
2.4 years ago ATpoint ★ 5.0k
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1.1k
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Answer: Answer: Why was the number of DEG different between DESeq results and count by myself us
2.4 years ago ATpoint ★ 5.0k
1
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1
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3.7k
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Answer: Answer: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
2.4 years ago ATpoint ★ 5.0k
1
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0
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3.7k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
2.4 years ago ATpoint ★ 5.0k
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
2.4 years ago ATpoint ★ 5.0k
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Answer: Answer: unable to retrieve certain packages from bioconductor 3.15
2.4 years ago ATpoint ★ 5.0k
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Comment: Comment: can't open mghp.osn.xsede.org
2.4 years ago ATpoint ★ 5.0k
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898
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Answer: Answer: FALSE error when checking a pre made sample data
2.4 years ago ATpoint ★ 5.0k
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Comment: Comment: bulk RNA-seq analysis using R : batch effect : One question concerning Combat-se
2.4 years ago ATpoint ★ 5.0k
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Answer: Answer: Recommendation for large.n in filterByExpr
2.4 years ago ATpoint ★ 5.0k
1,102 results • Page 8 of 23
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