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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
9 weeks ago ATpoint ★ 4.1k
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252
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Comment: Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
9 weeks ago ATpoint ★ 4.1k
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316
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Comment: Comment: problem in installing the new version of bioconductor
10 weeks ago ATpoint ★ 4.1k
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352
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
10 weeks ago ATpoint ★ 4.1k
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366
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Comment: Comment: vst transformation and zero counts
10 weeks ago ATpoint ★ 4.1k
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533
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Comment: Comment: Average biological replicates in RNA-seq
10 weeks ago ATpoint ★ 4.1k
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533
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Comment: Comment: Average biological replicates in RNA-seq
10 weeks ago ATpoint ★ 4.1k
2
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533
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Answer: Answer: Average biological replicates in RNA-seq
10 weeks ago ATpoint ★ 4.1k
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229
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
10 weeks ago ATpoint ★ 4.1k
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180
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Answer: Answer: Inconsistency in DESeq2 Log fold change
11 weeks ago ATpoint ★ 4.1k
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256
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
11 weeks ago ATpoint ★ 4.1k
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618
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Comment: Comment: How do you post on this forum?
12 weeks ago ATpoint ★ 4.1k
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276
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
12 weeks ago ATpoint ★ 4.1k
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410
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
12 weeks ago ATpoint ★ 4.1k
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6.5k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
12 weeks ago ATpoint ★ 4.1k
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358
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Comment: Comment: DESeq2 nomalize value
12 weeks ago ATpoint ★ 4.1k
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358
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Answer: Answer: DESeq2 nomalize value
12 weeks ago ATpoint ★ 4.1k
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263
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
3 months ago ATpoint ★ 4.1k
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298
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Comment: Comment: WGCNA Soft Power
3 months ago ATpoint ★ 4.1k
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569
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
3 months ago ATpoint ★ 4.1k
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462
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
3 months ago ATpoint ★ 4.1k
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2
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462
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
3 months ago ATpoint ★ 4.1k
0
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1
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441
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
3 months ago ATpoint ★ 4.1k
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242
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Comment: Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
3 months ago ATpoint ★ 4.1k
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561
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
4 months ago ATpoint ★ 4.1k
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415
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Comment: Comment: DESeq2 Normalization for QC Samples
4 months ago ATpoint ★ 4.1k
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1
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561
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
4 months ago ATpoint ★ 4.1k
2
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1
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634
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
4 months ago ATpoint ★ 4.1k
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1
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740
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Comment: Comment: Bioconductor installation
4 months ago ATpoint ★ 4.1k
0
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1
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561
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
4 months ago ATpoint ★ 4.1k
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429
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Comment: Comment: DESeq with multiple condition
4 months ago ATpoint ★ 4.1k
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1
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429
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Answer: Answer: DESeq with multiple condition
4 months ago ATpoint ★ 4.1k
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0
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683
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Comment: Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.1k
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0
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401
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Answer: Answer: Deseq2 -Model matrix not full rank error: A complex case
4 months ago ATpoint ★ 4.1k
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495
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Answer: Answer: lfcSE always positive. Does this make sense?
4 months ago ATpoint ★ 4.1k
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1
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596
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Answer: Answer: Read Count Normalisation and validation of analysis
4 months ago ATpoint ★ 4.1k
0
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1
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683
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.1k
1
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0
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472
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Answer: Answer: DESeq2: the model matrix is not full rank issue
4 months ago ATpoint ★ 4.1k
0
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0
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804
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago ATpoint ★ 4.1k
0
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1
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804
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago ATpoint ★ 4.1k
1
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0
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515
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Comment: Comment: Different genes expression with limma
4 months ago ATpoint ★ 4.1k
0
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350
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Answer: Answer: tximport error with rsem files
4 months ago ATpoint ★ 4.1k
0
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0
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340
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Answer: Answer: Running DESeq on normalized data
4 months ago ATpoint ★ 4.1k
1
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1
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330
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Comment: Comment: Inconsistent results in DiffBind
4 months ago ATpoint ★ 4.1k
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303
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Comment: Comment: Can't download Bioconductor
4 months ago ATpoint ★ 4.1k
0
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2
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916
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago ATpoint ★ 4.1k
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1
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916
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago ATpoint ★ 4.1k
0
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1
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1.7k
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Comment: Comment: JoinLayers function for Seurat Object for annotation with SingleR
4 months ago ATpoint ★ 4.1k
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531
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Comment: Comment: DESeq2 : stat or lfcshrink for GSEA analysis
4 months ago ATpoint ★ 4.1k
4
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927
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Answer: Answer: WGCNA documentation not available
4 months ago ATpoint ★ 4.1k
899 results • Page 2 of 18
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