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Answer: Answer: Read Count Normalisation and validation of analysis
4 months ago ATpoint ★ 4.1k
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710
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.1k
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0
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507
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Answer: Answer: DESeq2: the model matrix is not full rank issue
5 months ago ATpoint ★ 4.1k
0
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0
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842
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
5 months ago ATpoint ★ 4.1k
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1
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842
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
5 months ago ATpoint ★ 4.1k
1
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0
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548
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Comment: Comment: Different genes expression with limma
5 months ago ATpoint ★ 4.1k
0
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0
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368
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Answer: Answer: tximport error with rsem files
5 months ago ATpoint ★ 4.1k
0
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0
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350
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Answer: Answer: Running DESeq on normalized data
5 months ago ATpoint ★ 4.1k
1
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1
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350
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Comment: Comment: Inconsistent results in DiffBind
5 months ago ATpoint ★ 4.1k
0
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0
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327
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Comment: Comment: Can't download Bioconductor
5 months ago ATpoint ★ 4.1k
0
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2
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954
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
5 months ago ATpoint ★ 4.1k
0
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1
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954
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
5 months ago ATpoint ★ 4.1k
0
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1
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1.8k
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Comment: Comment: JoinLayers function for Seurat Object for annotation with SingleR
5 months ago ATpoint ★ 4.1k
0
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0
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572
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Comment: Comment: DESeq2 : stat or lfcshrink for GSEA analysis
5 months ago ATpoint ★ 4.1k
4
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0
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1.0k
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Answer: Answer: WGCNA documentation not available
5 months ago ATpoint ★ 4.1k
1
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1
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898
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Answer: Answer: ScRNAseq analysis scran :: quickcluster Error
5 months ago ATpoint ★ 4.1k
1
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0
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376
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Comment: Comment: DiffBind getting Fold values of near 0
5 months ago ATpoint ★ 4.1k
1
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1
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1.4k
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Answer: Answer: SingleR annotation of several slots/patients
5 months ago ATpoint ★ 4.1k
0
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1
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625
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Answer: Answer: How does Deseq2 deal with the row with zero when calculating size factors
5 months ago ATpoint ★ 4.1k
0
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1
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690
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Comment: Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
5 months ago ATpoint ★ 4.1k
1
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0
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354
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Answer: Answer: Differential gene expression analysis
5 months ago ATpoint ★ 4.1k
0
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0
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385
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Comment: Comment: bam or VCF files from GSE75010
5 months ago ATpoint ★ 4.1k
0
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1
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733
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Answer: Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
5 months ago ATpoint ★ 4.1k
0
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1
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324
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Answer: Answer: WGCNA less samples
5 months ago ATpoint ★ 4.1k
0
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1
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933
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Comment: Comment: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago ATpoint ★ 4.1k
1
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1
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933
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Answer: Answer: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago ATpoint ★ 4.1k
1
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1
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522
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Answer: Answer: DESeq2 estimateSizeFactors iterate takes too long
5 months ago ATpoint ★ 4.1k
1
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1
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703
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Answer: Answer: How to find stop codons for a list of genes
5 months ago ATpoint ★ 4.1k
0
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0
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385
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Comment: Comment: Fail to annotate chromosome data to single cell sequencing data obtained from ce
6 months ago ATpoint ★ 4.1k
0
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0
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2.2k
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Comment: Comment: Error when Installing BioConductor Package ('affy')
6 months ago ATpoint ★ 4.1k
0
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0
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327
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Answer: Answer: DESeq2 design with unbalance data and a multifactor design
6 months ago ATpoint ★ 4.1k
0
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0
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839
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Comment: Comment: trying to add SingleR label to Seurat Object fails
6 months ago ATpoint ★ 4.1k
0
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0
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6.8k
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Comment: Comment: scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by pa
6 months ago ATpoint ★ 4.1k
0
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0
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529
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Answer: Answer: WGCNA tutorial docs needed: Horvath Lab site down
6 months ago ATpoint ★ 4.1k
0
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0
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900
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Answer: Answer: weird volcano plot
6 months ago ATpoint ★ 4.1k
2
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1
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900
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Comment: Comment: weird volcano plot
6 months ago ATpoint ★ 4.1k
0
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0
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736
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Comment: Comment: DESeq2 unable to handle large count values
6 months ago ATpoint ★ 4.1k
2
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1
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989
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Answer: Answer: SparseArray unable to install on Bioc 3.18
6 months ago ATpoint ★ 4.1k
0
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1
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587
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Comment: Comment: rnaSeqGene workflow not available in Bioconductor 3.18
6 months ago ATpoint ★ 4.1k
0
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0
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530
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Comment: Comment: DESeq2: FPMs varying based on sample groups used
6 months ago ATpoint ★ 4.1k
0
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1
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750
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Answer: Answer: MA plot for DESEq2 analysis
6 months ago ATpoint ★ 4.1k
1
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0
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353
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Answer: Answer: DESeqResults object -> extract statistics results with rownames (gene)
6 months ago ATpoint ★ 4.1k
0
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1
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1.7k
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Comment: Comment: Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu
6 months ago ATpoint ★ 4.1k
0
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1
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530
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Answer: Answer: DESeq2: FPMs varying based on sample groups used
6 months ago ATpoint ★ 4.1k
0
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1
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842
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
6 months ago ATpoint ★ 4.1k
1
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3
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1.2k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago ATpoint ★ 4.1k
0
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2
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692
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Comment: Comment: Mfuzz package loading issues
6 months ago ATpoint ★ 4.1k
0
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1
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1.2k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago ATpoint ★ 4.1k
0
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1
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496
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Comment: Comment: can't update bioconductor 3.18
6 months ago ATpoint ★ 4.1k
0
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1
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920
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Answer: Answer: DESeq2 Normalization with 4 Groups
6 months ago ATpoint ★ 4.1k
914 results • Page 3 of 19
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