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Answer: Answer: Different Shrunk Log2FC according with reference
1 day ago ATpoint ★ 4.0k
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775
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
5 days ago ATpoint ★ 4.0k
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
7 days ago ATpoint ★ 4.0k
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121
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Answer: Answer: Can you find the correct transcript in scRNA seq data
15 days ago ATpoint ★ 4.0k
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
4 weeks ago ATpoint ★ 4.0k
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243
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Answer: Answer: RNA sequencing raw counts gene filtering
6 weeks ago ATpoint ★ 4.0k
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Answer: Answer: i'm not getting any differentially expressed genes.
6 weeks ago ATpoint ★ 4.0k
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
6 weeks ago ATpoint ★ 4.0k
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197
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Answer: Answer: Perform PCA for sample clustering using DESeq2
6 weeks ago ATpoint ★ 4.0k
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209
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
7 weeks ago ATpoint ★ 4.0k
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204
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Answer: Answer: Unusually large fold-changes in Deseq2 results
7 weeks ago ATpoint ★ 4.0k
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351
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
7 weeks ago ATpoint ★ 4.0k
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328
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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
8 weeks ago ATpoint ★ 4.0k
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337
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
9 weeks ago ATpoint ★ 4.0k
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508
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Answer: Answer: Average biological replicates in RNA-seq
9 weeks ago ATpoint ★ 4.0k
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221
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
9 weeks ago ATpoint ★ 4.0k
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169
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Answer: Answer: Inconsistency in DESeq2 Log fold change
9 weeks ago ATpoint ★ 4.0k
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242
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
10 weeks ago ATpoint ★ 4.0k
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383
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
11 weeks ago ATpoint ★ 4.0k
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333
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Answer: Answer: DESeq2 nomalize value
11 weeks ago ATpoint ★ 4.0k
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245
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
3 months ago ATpoint ★ 4.0k
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408
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
3 months ago ATpoint ★ 4.0k
2
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596
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
3 months ago ATpoint ★ 4.0k
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521
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
3 months ago ATpoint ★ 4.0k
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413
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Answer: Answer: DESeq with multiple condition
4 months ago ATpoint ★ 4.0k
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389
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Answer: Answer: Deseq2 -Model matrix not full rank error: A complex case
4 months ago ATpoint ★ 4.0k
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472
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Answer: Answer: lfcSE always positive. Does this make sense?
4 months ago ATpoint ★ 4.0k
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570
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Answer: Answer: Read Count Normalisation and validation of analysis
4 months ago ATpoint ★ 4.0k
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656
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.0k
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447
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Answer: Answer: DESeq2: the model matrix is not full rank issue
4 months ago ATpoint ★ 4.0k
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770
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago ATpoint ★ 4.0k
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324
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Answer: Answer: tximport error with rsem files
4 months ago ATpoint ★ 4.0k
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329
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Answer: Answer: Running DESeq on normalized data
4 months ago ATpoint ★ 4.0k
4
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868
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Answer: Answer: WGCNA documentation not available
4 months ago ATpoint ★ 4.0k
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780
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Answer: Answer: ScRNAseq analysis scran :: quickcluster Error
4 months ago ATpoint ★ 4.0k
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1.2k
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Answer: Answer: SingleR annotation of several slots/patients
4 months ago ATpoint ★ 4.0k
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562
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Answer: Answer: How does Deseq2 deal with the row with zero when calculating size factors
4 months ago ATpoint ★ 4.0k
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0
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322
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Answer: Answer: Differential gene expression analysis
4 months ago ATpoint ★ 4.0k
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676
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Answer: Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
4 months ago ATpoint ★ 4.0k
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301
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Answer: Answer: WGCNA less samples
5 months ago ATpoint ★ 4.0k
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890
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Answer: Answer: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago ATpoint ★ 4.0k
1
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1
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454
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Answer: Answer: DESeq2 estimateSizeFactors iterate takes too long
5 months ago ATpoint ★ 4.0k
1
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620
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Answer: Answer: How to find stop codons for a list of genes
5 months ago ATpoint ★ 4.0k
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307
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Answer: Answer: DESeq2 design with unbalance data and a multifactor design
5 months ago ATpoint ★ 4.0k
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480
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Answer: Answer: WGCNA tutorial docs needed: Horvath Lab site down
5 months ago ATpoint ★ 4.0k
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841
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Answer: Answer: weird volcano plot
5 months ago ATpoint ★ 4.0k
2
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902
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Answer: Answer: SparseArray unable to install on Bioc 3.18
5 months ago ATpoint ★ 4.0k
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639
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Answer: Answer: MA plot for DESEq2 analysis
5 months ago ATpoint ★ 4.0k
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334
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Answer: Answer: DESeqResults object -> extract statistics results with rownames (gene)
5 months ago ATpoint ★ 4.0k
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504
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Answer: Answer: DESeq2: FPMs varying based on sample groups used
5 months ago ATpoint ★ 4.0k
385 results • Page 1 of 8
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