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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
9 hours ago ATpoint ★ 4.0k
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92
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
1 day ago ATpoint ★ 4.0k
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131
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
2 days ago ATpoint ★ 4.0k
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241
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Comment: Comment: DESeq2 output used for PCA plot on R studio
2 days ago ATpoint ★ 4.0k
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199
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
7 days ago ATpoint ★ 4.0k
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199
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
7 days ago ATpoint ★ 4.0k
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80
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Comment: Comment: Input Question for deseq.r
8 days ago ATpoint ★ 4.0k
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112
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Comment: Comment: Deseq2 Rlog transformation
11 days ago ATpoint ★ 4.0k
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227
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
12 days ago • updated 11 days ago ATpoint ★ 4.0k
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399
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Comment: Comment: Not fully paired differential gene expression analysis
13 days ago ATpoint ★ 4.0k
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150
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Comment: Comment: [DiffBind] Obtaining normalization factors
13 days ago ATpoint ★ 4.0k
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237
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
15 days ago ATpoint ★ 4.0k
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237
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
15 days ago ATpoint ★ 4.0k
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237
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
15 days ago ATpoint ★ 4.0k
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399
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Comment: Comment: Not fully paired differential gene expression analysis
16 days ago ATpoint ★ 4.0k
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170
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
21 days ago ATpoint ★ 4.0k
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329
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Comment: Comment: PCA of different bacterial species
4 weeks ago ATpoint ★ 4.0k
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270
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
5 weeks ago ATpoint ★ 4.0k
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270
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
5 weeks ago ATpoint ★ 4.0k
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265
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
5 weeks ago ATpoint ★ 4.0k
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247
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Comment: Comment: Help with Complex DESeq2 Design
5 weeks ago ATpoint ★ 4.0k
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192
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Comment: Comment: Visium RNA
5 weeks ago ATpoint ★ 4.0k
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2.2k
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Comment: Comment: Fail BiocManager::install(version='3.12')
5 weeks ago ATpoint ★ 4.0k
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305
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
6 weeks ago ATpoint ★ 4.0k
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1
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230
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
6 weeks ago ATpoint ★ 4.0k
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200
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Comment: Comment: Rcpp compilation error
7 weeks ago ATpoint ★ 4.0k
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379
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Comment: Comment: DESeq and SVA for batch effect
7 weeks ago ATpoint ★ 4.0k
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1
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327
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Comment: Comment: Factor vs Character in design
7 weeks ago ATpoint ★ 4.0k
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329
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
8 weeks ago ATpoint ★ 4.0k
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240
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Comment: Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
8 weeks ago ATpoint ★ 4.0k
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1
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303
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Comment: Comment: problem in installing the new version of bioconductor
9 weeks ago ATpoint ★ 4.0k
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343
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Comment: Comment: vst transformation and zero counts
9 weeks ago ATpoint ★ 4.0k
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1
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509
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Comment: Comment: Average biological replicates in RNA-seq
9 weeks ago ATpoint ★ 4.0k
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1
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509
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Comment: Comment: Average biological replicates in RNA-seq
9 weeks ago ATpoint ★ 4.0k
1
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1
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574
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Comment: Comment: How do you post on this forum?
10 weeks ago ATpoint ★ 4.0k
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247
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
11 weeks ago ATpoint ★ 4.0k
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6.4k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
11 weeks ago ATpoint ★ 4.0k
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1
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334
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Comment: Comment: DESeq2 nomalize value
11 weeks ago ATpoint ★ 4.0k
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274
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Comment: Comment: WGCNA Soft Power
3 months ago ATpoint ★ 4.0k
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1
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548
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
3 months ago ATpoint ★ 4.0k
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444
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
3 months ago ATpoint ★ 4.0k
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2
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444
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
3 months ago ATpoint ★ 4.0k
0
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0
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226
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Comment: Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
3 months ago ATpoint ★ 4.0k
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0
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521
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
3 months ago ATpoint ★ 4.0k
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1
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399
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Comment: Comment: DESeq2 Normalization for QC Samples
3 months ago ATpoint ★ 4.0k
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1
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521
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
3 months ago ATpoint ★ 4.0k
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1
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700
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Comment: Comment: Bioconductor installation
3 months ago ATpoint ★ 4.0k
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0
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415
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Comment: Comment: DESeq with multiple condition
4 months ago ATpoint ★ 4.0k
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658
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Comment: Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.0k
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775
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago ATpoint ★ 4.0k
486 results • Page 1 of 10
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