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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
8 months ago ATpoint ★ 4.1k
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894
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Comment: Comment: Getting batch corrected counts after RUVSeq
8 months ago ATpoint ★ 4.1k
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571
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
8 months ago ATpoint ★ 4.1k
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1
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894
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Comment: Comment: Getting batch corrected counts after RUVSeq
8 months ago ATpoint ★ 4.1k
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1
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553
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Comment: Comment: AAbin vs DNAbin structures
8 months ago ATpoint ★ 4.1k
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1.1k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
8 months ago ATpoint ★ 4.1k
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1.6k
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Comment: Comment: PCA percent variance DESeq2
8 months ago ATpoint ★ 4.1k
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0
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2.9k
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Comment: Comment: Protein differential Expression analysis
8 months ago ATpoint ★ 4.1k
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1
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1.6k
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Comment: Comment: PCA percent variance DESeq2
9 months ago ATpoint ★ 4.1k
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970
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
9 months ago ATpoint ★ 4.1k
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1
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970
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
9 months ago ATpoint ★ 4.1k
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1
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1.4k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
9 months ago ATpoint ★ 4.1k
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1.4k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
9 months ago ATpoint ★ 4.1k
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1
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791
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
9 months ago ATpoint ★ 4.1k
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2
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1.4k
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Comment: Comment: can't open mghp.osn.xsede.org
9 months ago ATpoint ★ 4.1k
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1
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1.1k
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Comment: Comment: bulk RNA-seq analysis using R : batch effect : One question concerning Combat-se
9 months ago ATpoint ★ 4.1k
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1
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893
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Comment: Comment: lfcShrink() and batch effects in DESeq2
9 months ago ATpoint ★ 4.1k
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980
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Comment: Comment: Difference between DESeqDataSetFromMatrix() function and DESeq() function
9 months ago ATpoint ★ 4.1k
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717
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Comment: Comment: insufficient unique points for computing knee/inflection points
9 months ago ATpoint ★ 4.1k
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1
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717
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Comment: Comment: insufficient unique points for computing knee/inflection points
9 months ago ATpoint ★ 4.1k
0
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1
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795
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
9 months ago ATpoint ★ 4.1k
1
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589
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Comment: Comment: DESeq differential expression results are too stringet. How to relax my criteria
9 months ago ATpoint ★ 4.1k
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1
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1.1k
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Comment: Comment: Same few genes repeated in DESeq2 Results
9 months ago ATpoint ★ 4.1k
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1
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1.1k
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Comment: Comment: Same few genes repeated in DESeq2 Results
9 months ago ATpoint ★ 4.1k
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2
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837
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Comment: Comment: DESeq2 analysis
9 months ago ATpoint ★ 4.1k
1
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0
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765
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
9 months ago ATpoint ★ 4.1k
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1
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1.4k
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Comment: Comment: RNA seq differential expression analysis for large sample size
9 months ago ATpoint ★ 4.1k
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0
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3.2k
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Comment: Comment: diffbind
9 months ago ATpoint ★ 4.1k
1
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0
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541
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Comment: Comment: I changed the reference in DGE contrasts by DESeq2, but the results changed just
10 months ago ATpoint ★ 4.1k
1
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1
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1.0k
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Comment: Comment: Reading data into chromVAR
10 months ago ATpoint ★ 4.1k
0
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0
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594
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Comment: Comment: Pairwise comparison for DEG analysis
10 months ago ATpoint ★ 4.1k
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0
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673
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Comment: Comment: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
10 months ago ATpoint ★ 4.1k
1
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0
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799
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Comment: Comment: Identify highly variable genes after vst
10 months ago ATpoint ★ 4.1k
1
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1
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983
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Comment: Comment: how to remove batch effects of RNA seq data based on continuous variables(like s
10 months ago ATpoint ★ 4.1k
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0
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1.2k
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Comment: Comment: PCA for QC should include subset of top variable genes or full set of genes in R
10 months ago ATpoint ★ 4.1k
0
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2
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825
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Comment: Comment: DESeq2 design formula
10 months ago ATpoint ★ 4.1k
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0
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620
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Comment: Comment: Normalization of different input materials
10 months ago ATpoint ★ 4.1k
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0
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1.5k
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Comment: Comment: Choosing between VST and rlog for PCA for outlier identification in DESeq2 when
10 months ago ATpoint ★ 4.1k
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1
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1.5k
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Comment: Comment: Choosing between VST and rlog for PCA for outlier identification in DESeq2 when
10 months ago ATpoint ★ 4.1k
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1
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726
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Comment: Comment: fastMNN reproducibility across machines when using Docker
10 months ago ATpoint ★ 4.1k
0
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0
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651
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Comment: Comment: DESeq2 package unrecognized after downloading latest version of R: keep getting
11 months ago ATpoint ★ 4.1k
0
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0
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611
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Comment: Comment: 'Killed' error during RNAseq alignment
11 months ago ATpoint ★ 4.1k
0
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0
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720
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Comment: Comment: Get Intron Seq
11 months ago ATpoint ★ 4.1k
0
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1
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786
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Comment: Comment: DESeq2 with nbinomGLM issues
11 months ago ATpoint ★ 4.1k
0
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0
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585
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Comment: Comment: RNA seq differential expression analysis
11 months ago ATpoint ★ 4.1k
0
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0
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509
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Comment: Comment: Can DESeq2 handle low number of samples and replicates?
11 months ago ATpoint ★ 4.1k
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1
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1.1k
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Comment: Comment: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
11 months ago ATpoint ★ 4.1k
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1
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1.1k
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Comment: Comment: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
11 months ago ATpoint ★ 4.1k
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1
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1.3k
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Comment: Comment: P-value histogram of testLinearModel is not uniform
11 months ago ATpoint ★ 4.1k
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0
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722
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Comment: Comment: Extract Limma Adjusted Values for Plotting
11 months ago ATpoint ★ 4.1k
501 results • Page 3 of 11
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