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Comment: Comment: Differences in differential analysis methods for RNA-Seq
2 days ago ATpoint ★ 4.1k
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117
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
2 days ago ATpoint ★ 4.1k
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118
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
3 days ago ATpoint ★ 4.1k
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
3 days ago ATpoint ★ 4.1k
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Answer: Answer: putting my own expression data in deseq2
4 days ago ATpoint ★ 4.1k
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219
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Comment: Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
5 days ago ATpoint ★ 4.1k
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
6 days ago ATpoint ★ 4.1k
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Answer: Answer: ATACseq merge peaks
8 days ago ATpoint ★ 4.1k
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211
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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
9 days ago ATpoint ★ 4.1k
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155
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
10 days ago ATpoint ★ 4.1k
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
10 days ago ATpoint ★ 4.1k
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243
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
11 days ago ATpoint ★ 4.1k
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207
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Answer: Answer: Different Shrunk Log2FC according with reference
11 days ago ATpoint ★ 4.1k
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341
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Comment: Comment: DESeq2 output used for PCA plot on R studio
11 days ago ATpoint ★ 4.1k
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1.2k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
14 days ago ATpoint ★ 4.1k
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235
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
16 days ago ATpoint ★ 4.1k
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235
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
16 days ago ATpoint ★ 4.1k
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98
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Comment: Comment: Input Question for deseq.r
16 days ago ATpoint ★ 4.1k
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147
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
16 days ago ATpoint ★ 4.1k
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130
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Comment: Comment: Deseq2 Rlog transformation
19 days ago ATpoint ★ 4.1k
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254
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
21 days ago • updated 19 days ago ATpoint ★ 4.1k
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425
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Comment: Comment: Not fully paired differential gene expression analysis
22 days ago ATpoint ★ 4.1k
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171
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Comment: Comment: [DiffBind] Obtaining normalization factors
22 days ago ATpoint ★ 4.1k
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270
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
23 days ago ATpoint ★ 4.1k
1
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1
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270
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
23 days ago ATpoint ★ 4.1k
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1
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270
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
23 days ago ATpoint ★ 4.1k
0
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139
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Answer: Answer: Can you find the correct transcript in scRNA seq data
24 days ago ATpoint ★ 4.1k
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425
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Comment: Comment: Not fully paired differential gene expression analysis
24 days ago ATpoint ★ 4.1k
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196
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
29 days ago ATpoint ★ 4.1k
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348
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Comment: Comment: PCA of different bacterial species
5 weeks ago ATpoint ★ 4.1k
2
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234
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
5 weeks ago ATpoint ★ 4.1k
0
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1
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290
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
6 weeks ago ATpoint ★ 4.1k
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290
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
6 weeks ago ATpoint ★ 4.1k
1
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0
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288
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
6 weeks ago ATpoint ★ 4.1k
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262
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Comment: Comment: Help with Complex DESeq2 Design
6 weeks ago ATpoint ★ 4.1k
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201
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Comment: Comment: Visium RNA
6 weeks ago ATpoint ★ 4.1k
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2.2k
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Comment: Comment: Fail BiocManager::install(version='3.12')
7 weeks ago ATpoint ★ 4.1k
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322
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
7 weeks ago ATpoint ★ 4.1k
0
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248
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
7 weeks ago ATpoint ★ 4.1k
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265
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Answer: Answer: RNA sequencing raw counts gene filtering
7 weeks ago ATpoint ★ 4.1k
0
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215
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Answer: Answer: i'm not getting any differentially expressed genes.
7 weeks ago ATpoint ★ 4.1k
2
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0
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247
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
7 weeks ago ATpoint ★ 4.1k
1
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0
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202
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Answer: Answer: Perform PCA for sample clustering using DESeq2
7 weeks ago ATpoint ★ 4.1k
0
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219
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Comment: Comment: Rcpp compilation error
8 weeks ago ATpoint ★ 4.1k
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223
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
8 weeks ago ATpoint ★ 4.1k
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401
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Comment: Comment: DESeq and SVA for batch effect
8 weeks ago ATpoint ★ 4.1k
0
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209
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Answer: Answer: Unusually large fold-changes in Deseq2 results
8 weeks ago ATpoint ★ 4.1k
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346
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Comment: Comment: Factor vs Character in design
8 weeks ago ATpoint ★ 4.1k
0
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0
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363
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
9 weeks ago ATpoint ★ 4.1k
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355
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
9 weeks ago ATpoint ★ 4.1k
899 results • Page 1 of 18
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