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Answer: Answer: WGCNA tutorial docs needed: Horvath Lab site down
5 months ago ATpoint ★ 4.1k
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872
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Answer: Answer: weird volcano plot
5 months ago ATpoint ★ 4.1k
2
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931
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Answer: Answer: SparseArray unable to install on Bioc 3.18
6 months ago ATpoint ★ 4.1k
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686
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Answer: Answer: MA plot for DESEq2 analysis
6 months ago ATpoint ★ 4.1k
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340
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Answer: Answer: DESeqResults object -> extract statistics results with rownames (gene)
6 months ago ATpoint ★ 4.1k
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508
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Answer: Answer: DESeq2: FPMs varying based on sample groups used
6 months ago ATpoint ★ 4.1k
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859
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Answer: Answer: DESeq2 Normalization with 4 Groups
6 months ago ATpoint ★ 4.1k
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607
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Answer: Answer: choosing rank for GSEA
6 months ago ATpoint ★ 4.1k
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568
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Answer: Answer: Using dplyr commands with DataFrame objects
6 months ago ATpoint ★ 4.1k
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473
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Answer: Answer: Differential Expression Cutoffs for n = 1
6 months ago ATpoint ★ 4.1k
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2
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870
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Answer: Answer: DESeq2: Design model includes sex but only one female
6 months ago ATpoint ★ 4.1k
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512
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Answer: Answer: scRNA analysis : DEG between low and high-expressing cells
7 months ago ATpoint ★ 4.1k
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776
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Answer: Answer: Biostrings error at retrieving protein sequences
7 months ago ATpoint ★ 4.1k
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374
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Answer: Answer: Extract LRT results for each comparison
7 months ago ATpoint ★ 4.1k
4
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757
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Answer: Answer: ComBat_seq function in sva package does not return a matrix
7 months ago ATpoint ★ 4.1k
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447
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Answer: Answer: Batch effect adjust in model matrix
7 months ago ATpoint ★ 4.1k
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502
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Answer: Answer: DeSeq2 design fails (full model matrix is less than full rank)
7 months ago ATpoint ★ 4.1k
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328
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Answer: Answer: Adding chromosome numbers to the respective gene ids of DESeq2 output file
7 months ago ATpoint ★ 4.1k
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Answer: Answer: Differential expression analysis with only FPKM matrix available from total newb
7 months ago ATpoint ★ 4.1k
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1.0k
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Answer: Answer: Software Compatibility Issue Between phyloseq and lme4 Packages
7 months ago ATpoint ★ 4.1k
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5
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6.1k
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Answer: Answer: SingleR Label.Ont
7 months ago ATpoint ★ 4.1k
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1.6k
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Answer: Answer: TPM from STAR mapped counts
7 months ago ATpoint ★ 4.1k
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296
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Answer: Answer: Missing genes in the differentially expressed gene list which otherwise are expe
7 months ago ATpoint ★ 4.1k
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859
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Answer: Answer: Getting batch corrected counts after RUVSeq
7 months ago ATpoint ★ 4.1k
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311
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
7 months ago ATpoint ★ 4.1k
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458
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Answer: Answer: bulk RNA-Seq batch correction
8 months ago ATpoint ★ 4.1k
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934
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Answer: Answer: MACS2 not installing
8 months ago ATpoint ★ 4.1k
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659
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
8 months ago ATpoint ★ 4.1k
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499
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
8 months ago ATpoint ★ 4.1k
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1.4k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
8 months ago ATpoint ★ 4.1k
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359
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Answer: Answer: Speeding up large scale scRNAseq analyses in R and improve memory
8 months ago ATpoint ★ 4.1k
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391
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Answer: Answer: TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
8 months ago ATpoint ★ 4.1k
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391
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Answer: Answer: Package "Netboost" is an Unix-only package, how can I install it in R?
8 months ago ATpoint ★ 4.1k
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434
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Answer: Answer: Getting NAs in both p-values (normal and adjusted) in DEseq2
8 months ago ATpoint ★ 4.1k
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1.5k
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Answer: Answer: PCA percent variance DESeq2
8 months ago ATpoint ★ 4.1k
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922
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Answer: Answer: Time-series RNA-seq analysis using DESeq2
8 months ago ATpoint ★ 4.1k
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507
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Answer: Answer: Why was the number of DEG different between DESeq results and count by myself us
8 months ago ATpoint ★ 4.1k
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1.3k
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Answer: Answer: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
8 months ago ATpoint ★ 4.1k
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661
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Answer: Answer: unable to retrieve certain packages from bioconductor 3.15
8 months ago ATpoint ★ 4.1k
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389
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Answer: Answer: FALSE error when checking a pre made sample data
8 months ago ATpoint ★ 4.1k
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856
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Answer: Answer: Recommendation for large.n in filterByExpr
9 months ago ATpoint ★ 4.1k
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1.0k
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Answer: Answer: DESeq2 error after installing BiocManager
9 months ago ATpoint ★ 4.1k
2
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1
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874
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Answer: Answer: lfcShrink() and batch effects in DESeq2
9 months ago ATpoint ★ 4.1k
2
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474
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Answer: Answer: Zero counts for all samples for all genes downloaded from recount3
9 months ago ATpoint ★ 4.1k
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463
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Answer: Answer: Inquiring about Comparative Analysis without Replicates in NOIseq R Package
9 months ago ATpoint ★ 4.1k
2
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2
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439
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Answer: Answer: DESeq2: full model matrix is less than full rank
9 months ago ATpoint ★ 4.1k
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897
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Answer: Answer: Difference between DESeqDataSetFromMatrix() function and DESeq() function
9 months ago ATpoint ★ 4.1k
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879
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Answer: Answer: DESeq2 discrepancy in log2FC significance and normalized counts significance
9 months ago ATpoint ★ 4.1k
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420
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Answer: Answer: If highly-expressed genes are upregulated, what happens to genes with lower expr
9 months ago ATpoint ★ 4.1k
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569
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Answer: Answer: DESeq differential expression results are too stringet. How to relax my criteria
9 months ago ATpoint ★ 4.1k
391 results • Page 2 of 8
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