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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
4 months ago ATpoint ★ 4.1k
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1
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750
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Comment: Comment: Bioconductor installation
4 months ago ATpoint ★ 4.1k
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430
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Comment: Comment: DESeq with multiple condition
4 months ago ATpoint ★ 4.1k
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689
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Comment: Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
4 months ago ATpoint ★ 4.1k
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813
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago ATpoint ★ 4.1k
1
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0
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520
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Comment: Comment: Different genes expression with limma
4 months ago ATpoint ★ 4.1k
1
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1
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331
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Comment: Comment: Inconsistent results in DiffBind
4 months ago ATpoint ★ 4.1k
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309
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Comment: Comment: Can't download Bioconductor
4 months ago ATpoint ★ 4.1k
0
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2
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921
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago ATpoint ★ 4.1k
0
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1
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921
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
4 months ago ATpoint ★ 4.1k
0
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1
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1.7k
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Comment: Comment: JoinLayers function for Seurat Object for annotation with SingleR
5 months ago ATpoint ★ 4.1k
0
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0
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533
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Comment: Comment: DESeq2 : stat or lfcshrink for GSEA analysis
5 months ago ATpoint ★ 4.1k
1
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0
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358
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Comment: Comment: DiffBind getting Fold values of near 0
5 months ago ATpoint ★ 4.1k
0
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1
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640
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Comment: Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
5 months ago ATpoint ★ 4.1k
0
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0
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374
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Comment: Comment: bam or VCF files from GSE75010
5 months ago ATpoint ★ 4.1k
0
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1
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915
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Comment: Comment: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago ATpoint ★ 4.1k
0
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0
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356
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Comment: Comment: Fail to annotate chromosome data to single cell sequencing data obtained from ce
5 months ago ATpoint ★ 4.1k
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0
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2.1k
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Comment: Comment: Error when Installing BioConductor Package ('affy')
5 months ago ATpoint ★ 4.1k
0
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0
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783
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Comment: Comment: trying to add SingleR label to Seurat Object fails
5 months ago ATpoint ★ 4.1k
0
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0
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6.6k
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Comment: Comment: scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by pa
5 months ago ATpoint ★ 4.1k
2
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1
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875
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Comment: Comment: weird volcano plot
5 months ago ATpoint ★ 4.1k
0
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0
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705
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Comment: Comment: DESeq2 unable to handle large count values
5 months ago ATpoint ★ 4.1k
0
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1
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556
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Comment: Comment: rnaSeqGene workflow not available in Bioconductor 3.18
6 months ago ATpoint ★ 4.1k
0
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0
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509
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Comment: Comment: DESeq2: FPMs varying based on sample groups used
6 months ago ATpoint ★ 4.1k
0
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1
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1.6k
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Comment: Comment: Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu
6 months ago ATpoint ★ 4.1k
0
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1
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822
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
6 months ago ATpoint ★ 4.1k
1
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3
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1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago ATpoint ★ 4.1k
0
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2
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660
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Comment: Comment: Mfuzz package loading issues
6 months ago ATpoint ★ 4.1k
0
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1
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1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago ATpoint ★ 4.1k
0
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1
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476
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Comment: Comment: can't update bioconductor 3.18
6 months ago ATpoint ★ 4.1k
1
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0
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952
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Comment: Comment: [Bug] Segfault in edgeR::cpm
6 months ago ATpoint ★ 4.1k
0
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0
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518
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Comment: Comment: Duplicated expression values?
6 months ago ATpoint ★ 4.1k
0
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0
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464
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Comment: Comment: edgeR: Time course RNA-seq experiments
6 months ago ATpoint ★ 4.1k
1
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0
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708
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Comment: Comment: limma: More differentially expressed genes when factor included in model than wh
7 months ago ATpoint ★ 4.1k
0
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0
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374
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Comment: Comment: Extract LRT results for each comparison
7 months ago ATpoint ★ 4.1k
0
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1
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345
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
7 months ago ATpoint ★ 4.1k
0
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0
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652
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Comment: Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
7 months ago ATpoint ★ 4.1k
0
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2
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654
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Comment: Comment: DataFrame Construction With Non-standard Column
7 months ago ATpoint ★ 4.1k
0
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1
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654
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Comment: Comment: DataFrame Construction With Non-standard Column
7 months ago ATpoint ★ 4.1k
0
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0
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385
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Comment: Comment: TxDb.Dmelanogaster.UCSC.dm3.ensGene
7 months ago ATpoint ★ 4.1k
0
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0
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459
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
7 months ago ATpoint ★ 4.1k
1
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0
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861
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Comment: Comment: Getting batch corrected counts after RUVSeq
7 months ago ATpoint ★ 4.1k
1
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0
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548
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
7 months ago ATpoint ★ 4.1k
1
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1
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861
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Comment: Comment: Getting batch corrected counts after RUVSeq
7 months ago ATpoint ★ 4.1k
0
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1
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537
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Comment: Comment: AAbin vs DNAbin structures
8 months ago ATpoint ★ 4.1k
0
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0
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1.1k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
8 months ago ATpoint ★ 4.1k
1
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0
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1.5k
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Comment: Comment: PCA percent variance DESeq2
8 months ago ATpoint ★ 4.1k
0
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0
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2.9k
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Comment: Comment: Protein differential Expression analysis
8 months ago ATpoint ★ 4.1k
0
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1
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1.5k
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Comment: Comment: PCA percent variance DESeq2
8 months ago ATpoint ★ 4.1k
0
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0
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928
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
8 months ago ATpoint ★ 4.1k
491 results • Page 2 of 10
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