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809
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Answer: Answer: ScRNAseq analysis scran :: quickcluster Error
5 months ago ATpoint ★ 4.1k
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355
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Comment: Comment: DiffBind getting Fold values of near 0
5 months ago ATpoint ★ 4.1k
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1
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1.3k
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Answer: Answer: SingleR annotation of several slots/patients
5 months ago ATpoint ★ 4.1k
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578
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Answer: Answer: How does Deseq2 deal with the row with zero when calculating size factors
5 months ago ATpoint ★ 4.1k
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1
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630
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Comment: Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
5 months ago ATpoint ★ 4.1k
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0
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333
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Answer: Answer: Differential gene expression analysis
5 months ago ATpoint ★ 4.1k
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372
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Comment: Comment: bam or VCF files from GSE75010
5 months ago ATpoint ★ 4.1k
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1
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700
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Answer: Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
5 months ago ATpoint ★ 4.1k
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1
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312
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Answer: Answer: WGCNA less samples
5 months ago ATpoint ★ 4.1k
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1
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909
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Comment: Comment: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago ATpoint ★ 4.1k
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1
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909
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Answer: Answer: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago ATpoint ★ 4.1k
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1
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472
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Answer: Answer: DESeq2 estimateSizeFactors iterate takes too long
5 months ago ATpoint ★ 4.1k
1
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1
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657
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Answer: Answer: How to find stop codons for a list of genes
5 months ago ATpoint ★ 4.1k
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352
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Comment: Comment: Fail to annotate chromosome data to single cell sequencing data obtained from ce
5 months ago ATpoint ★ 4.1k
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2.1k
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Comment: Comment: Error when Installing BioConductor Package ('affy')
5 months ago ATpoint ★ 4.1k
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0
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317
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Answer: Answer: DESeq2 design with unbalance data and a multifactor design
5 months ago ATpoint ★ 4.1k
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775
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Comment: Comment: trying to add SingleR label to Seurat Object fails
5 months ago ATpoint ★ 4.1k
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6.6k
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Comment: Comment: scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by pa
5 months ago ATpoint ★ 4.1k
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496
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Answer: Answer: WGCNA tutorial docs needed: Horvath Lab site down
5 months ago ATpoint ★ 4.1k
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0
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866
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Answer: Answer: weird volcano plot
5 months ago ATpoint ★ 4.1k
2
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1
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866
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Comment: Comment: weird volcano plot
5 months ago ATpoint ★ 4.1k
0
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0
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699
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Comment: Comment: DESeq2 unable to handle large count values
5 months ago ATpoint ★ 4.1k
2
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1
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928
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Answer: Answer: SparseArray unable to install on Bioc 3.18
5 months ago ATpoint ★ 4.1k
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1
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551
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Comment: Comment: rnaSeqGene workflow not available in Bioconductor 3.18
5 months ago ATpoint ★ 4.1k
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0
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507
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Comment: Comment: DESeq2: FPMs varying based on sample groups used
6 months ago ATpoint ★ 4.1k
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1
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677
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Answer: Answer: MA plot for DESEq2 analysis
6 months ago ATpoint ★ 4.1k
1
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0
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340
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Answer: Answer: DESeqResults object -> extract statistics results with rownames (gene)
6 months ago ATpoint ★ 4.1k
0
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1
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1.6k
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Comment: Comment: Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu
6 months ago ATpoint ★ 4.1k
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1
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507
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Answer: Answer: DESeq2: FPMs varying based on sample groups used
6 months ago ATpoint ★ 4.1k
0
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1
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821
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
6 months ago ATpoint ★ 4.1k
1
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3
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1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago ATpoint ★ 4.1k
0
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2
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659
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Comment: Comment: Mfuzz package loading issues
6 months ago ATpoint ★ 4.1k
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1
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1.1k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago ATpoint ★ 4.1k
0
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1
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473
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Comment: Comment: can't update bioconductor 3.18
6 months ago ATpoint ★ 4.1k
0
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1
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854
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Answer: Answer: DESeq2 Normalization with 4 Groups
6 months ago ATpoint ★ 4.1k
1
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0
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948
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Comment: Comment: [Bug] Segfault in edgeR::cpm
6 months ago ATpoint ★ 4.1k
0
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0
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603
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Answer: Answer: choosing rank for GSEA
6 months ago ATpoint ★ 4.1k
0
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0
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516
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Comment: Comment: Duplicated expression values?
6 months ago ATpoint ★ 4.1k
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1
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564
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Answer: Answer: Using dplyr commands with DataFrame objects
6 months ago ATpoint ★ 4.1k
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1
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472
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Answer: Answer: Differential Expression Cutoffs for n = 1
6 months ago ATpoint ★ 4.1k
0
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0
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461
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Comment: Comment: edgeR: Time course RNA-seq experiments
6 months ago ATpoint ★ 4.1k
2
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2
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866
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Answer: Answer: DESeq2: Design model includes sex but only one female
6 months ago ATpoint ★ 4.1k
1
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0
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705
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Comment: Comment: limma: More differentially expressed genes when factor included in model than wh
6 months ago ATpoint ★ 4.1k
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1
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511
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Answer: Answer: scRNA analysis : DEG between low and high-expressing cells
7 months ago ATpoint ★ 4.1k
0
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0
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372
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Comment: Comment: Extract LRT results for each comparison
7 months ago ATpoint ★ 4.1k
1
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2
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773
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Answer: Answer: Biostrings error at retrieving protein sequences
7 months ago ATpoint ★ 4.1k
0
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1
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372
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Answer: Answer: Extract LRT results for each comparison
7 months ago ATpoint ★ 4.1k
4
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1
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754
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Answer: Answer: ComBat_seq function in sva package does not return a matrix
7 months ago ATpoint ★ 4.1k
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1
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345
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
7 months ago ATpoint ★ 4.1k
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0
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446
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Answer: Answer: Batch effect adjust in model matrix
7 months ago ATpoint ★ 4.1k
899 results • Page 3 of 18
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