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359
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Answer:
Answer: tximport error with rsem files
4 months ago
ATpoint
★ 4.1k
0
votes
0
replies
346
views
Answer:
Answer: Running DESeq on normalized data
4 months ago
ATpoint
★ 4.1k
1
vote
1
reply
335
views
Comment:
Comment: Inconsistent results in DiffBind
5 months ago
ATpoint
★ 4.1k
0
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0
replies
316
views
Comment:
Comment: Can't download Bioconductor
5 months ago
ATpoint
★ 4.1k
0
votes
2
replies
935
views
Comment:
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
5 months ago
ATpoint
★ 4.1k
0
votes
1
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935
views
Comment:
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
5 months ago
ATpoint
★ 4.1k
0
votes
1
reply
1.8k
views
Comment:
Comment: JoinLayers function for Seurat Object for annotation with SingleR
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
546
views
Comment:
Comment: DESeq2 : stat or lfcshrink for GSEA analysis
5 months ago
ATpoint
★ 4.1k
4
votes
0
replies
975
views
Answer:
Answer: WGCNA documentation not available
5 months ago
ATpoint
★ 4.1k
1
vote
1
reply
838
views
Answer:
Answer: ScRNAseq analysis scran :: quickcluster Error
5 months ago
ATpoint
★ 4.1k
1
vote
0
replies
364
views
Comment:
Comment: DiffBind getting Fold values of near 0
5 months ago
ATpoint
★ 4.1k
1
vote
1
reply
1.3k
views
Answer:
Answer: SingleR annotation of several slots/patients
5 months ago
ATpoint
★ 4.1k
0
votes
1
reply
597
views
Answer:
Answer: How does Deseq2 deal with the row with zero when calculating size factors
5 months ago
ATpoint
★ 4.1k
0
votes
1
reply
662
views
Comment:
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
5 months ago
ATpoint
★ 4.1k
1
vote
0
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342
views
Answer:
Answer: Differential gene expression analysis
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
377
views
Comment:
Comment: bam or VCF files from GSE75010
5 months ago
ATpoint
★ 4.1k
0
votes
1
reply
715
views
Answer:
Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
5 months ago
ATpoint
★ 4.1k
0
votes
1
reply
316
views
Answer:
Answer: WGCNA less samples
5 months ago
ATpoint
★ 4.1k
0
votes
1
reply
920
views
Comment:
Comment: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago
ATpoint
★ 4.1k
1
vote
1
reply
920
views
Answer:
Answer: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
5 months ago
ATpoint
★ 4.1k
1
vote
1
reply
489
views
Answer:
Answer: DESeq2 estimateSizeFactors iterate takes too long
5 months ago
ATpoint
★ 4.1k
1
vote
1
reply
681
views
Answer:
Answer: How to find stop codons for a list of genes
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
360
views
Comment:
Comment: Fail to annotate chromosome data to single cell sequencing data obtained from ce
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
2.2k
views
Comment:
Comment: Error when Installing BioConductor Package ('affy')
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
321
views
Answer:
Answer: DESeq2 design with unbalance data and a multifactor design
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
802
views
Comment:
Comment: trying to add SingleR label to Seurat Object fails
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
6.7k
views
Comment:
Comment: scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by pa
5 months ago
ATpoint
★ 4.1k
0
votes
0
replies
510
views
Answer:
Answer: WGCNA tutorial docs needed: Horvath Lab site down
6 months ago
ATpoint
★ 4.1k
0
votes
0
replies
883
views
Answer:
Answer: weird volcano plot
6 months ago
ATpoint
★ 4.1k
2
votes
1
reply
883
views
Comment:
Comment: weird volcano plot
6 months ago
ATpoint
★ 4.1k
0
votes
0
replies
720
views
Comment:
Comment: DESeq2 unable to handle large count values
6 months ago
ATpoint
★ 4.1k
2
votes
1
reply
965
views
Answer:
Answer: SparseArray unable to install on Bioc 3.18
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
563
views
Comment:
Comment: rnaSeqGene workflow not available in Bioconductor 3.18
6 months ago
ATpoint
★ 4.1k
0
votes
0
replies
511
views
Comment:
Comment: DESeq2: FPMs varying based on sample groups used
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
716
views
Answer:
Answer: MA plot for DESEq2 analysis
6 months ago
ATpoint
★ 4.1k
1
vote
0
replies
345
views
Answer:
Answer: DESeqResults object -> extract statistics results with rownames (gene)
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
1.6k
views
Comment:
Comment: Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
511
views
Answer:
Answer: DESeq2: FPMs varying based on sample groups used
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
828
views
Comment:
Comment: Quickly calculating adjusted Fold Change with DESeq2
6 months ago
ATpoint
★ 4.1k
1
vote
3
replies
1.1k
views
Comment:
Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago
ATpoint
★ 4.1k
0
votes
2
replies
669
views
Comment:
Comment: Mfuzz package loading issues
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
1.1k
views
Comment:
Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
480
views
Comment:
Comment: can't update bioconductor 3.18
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
874
views
Answer:
Answer: DESeq2 Normalization with 4 Groups
6 months ago
ATpoint
★ 4.1k
1
vote
0
replies
957
views
Comment:
Comment: [Bug] Segfault in edgeR::cpm
6 months ago
ATpoint
★ 4.1k
0
votes
0
replies
628
views
Answer:
Answer: choosing rank for GSEA
6 months ago
ATpoint
★ 4.1k
0
votes
0
replies
524
views
Comment:
Comment: Duplicated expression values?
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
582
views
Answer:
Answer: Using dplyr commands with DataFrame objects
6 months ago
ATpoint
★ 4.1k
0
votes
1
reply
481
views
Answer:
Answer: Differential Expression Cutoffs for n = 1
7 months ago
ATpoint
★ 4.1k
0
votes
0
replies
470
views
Comment:
Comment: edgeR: Time course RNA-seq experiments
7 months ago
ATpoint
★ 4.1k
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