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Answer: Answer: If highly-expressed genes are upregulated, what happens to genes with lower expr
9 months ago ATpoint ★ 4.1k
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Answer: Answer: DESeq differential expression results are too stringet. How to relax my criteria
9 months ago ATpoint ★ 4.1k
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Answer: Answer: Same few genes repeated in DESeq2 Results
9 months ago ATpoint ★ 4.1k
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Answer: Answer: vmatchPattern on DNAstring set
9 months ago ATpoint ★ 4.1k
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Answer: Answer: DESeq2 analysis
9 months ago ATpoint ★ 4.1k
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Answer: Answer: Warning messages in detecting P-values
9 months ago ATpoint ★ 4.1k
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Answer: Answer: RNA seq differential expression analysis for large sample size
9 months ago ATpoint ★ 4.1k
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Answer: Answer: Affymetrix hgu133plus2.db: How to best derive an expression value for genes that
9 months ago ATpoint ★ 4.1k
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Answer: Answer: Building Multifactor Model in DESeq2
9 months ago ATpoint ★ 4.1k
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Answer: Answer: Read methylation data from tar files on GEO (GSE73303)
10 months ago ATpoint ★ 4.1k
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Answer: Answer: Unable to install DESeq2
10 months ago ATpoint ★ 4.1k
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Answer: Answer: Correct DESeq2 design for tumoral stage differences in tumoral and matched-norma
10 months ago ATpoint ★ 4.1k
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Answer: Answer: For limma, if I leave coef=NULL, which test is the P value for?
10 months ago ATpoint ★ 4.1k
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Answer: Answer: DGE analysis for diseased samples through DESeq2 and Ballgown
10 months ago ATpoint ★ 4.1k
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Answer: Answer: Specifying design in DESeqDataSetFromMatrix
10 months ago ATpoint ★ 4.1k
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Answer: Answer: package is not available for this version of R
10 months ago ATpoint ★ 4.1k
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Answer: Answer: Importing RSEM processed data already formatted as a summarized experiment into
10 months ago ATpoint ★ 4.1k
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Answer: Answer: Identify highly variable genes after vst
10 months ago ATpoint ★ 4.1k
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Answer: Answer: Error in SingleR, no common genes between 'test' and 'ref'
10 months ago ATpoint ★ 4.1k
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Answer: Answer: really low padj value from DESeq2
10 months ago ATpoint ★ 4.1k
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Answer: Answer: PCA for QC should include subset of top variable genes or full set of genes in R
10 months ago ATpoint ★ 4.1k
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Answer: Answer: DESEQ2 differential expression for subsets of data?
10 months ago ATpoint ★ 4.1k
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Answer: Answer: plotCounts label each sample
10 months ago ATpoint ★ 4.1k
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979
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Answer: Answer: What GENCODE GFF file for calculating exon length for TPM
10 months ago ATpoint ★ 4.1k
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Answer: Answer: Normalization of different input materials
10 months ago ATpoint ★ 4.1k
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Answer: Answer: WGCNA Cluster batch effect
10 months ago ATpoint ★ 4.1k
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Answer: Answer: limma paired design
11 months ago ATpoint ★ 4.1k
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855
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Answer: Answer: runPCA in a SingleCellExperiment results ina colMeans error
11 months ago ATpoint ★ 4.1k
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Answer: Answer: Hub genes selection in WGCNA
11 months ago ATpoint ★ 4.1k
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651
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Answer: Answer: DESeq2 package unrecognized after downloading latest version of R: keep getting
11 months ago ATpoint ★ 4.1k
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5.7k
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Answer: Answer: scran ScoreMarkers throws a warning
11 months ago ATpoint ★ 4.1k
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682
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Answer: Answer: tximport error in reading salmon output files?
11 months ago ATpoint ★ 4.1k
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Answer: Answer: Making MDS plot
11 months ago ATpoint ★ 4.1k
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Answer: Answer: DESeq2 lfcShrink function used in DiffBind package
11 months ago ATpoint ★ 4.1k
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Answer: Answer: Fishpond/Swish Interaction Test Error
11 months ago ATpoint ★ 4.1k
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Answer: Answer: Whether to build DESeq2 model with all data and then contrast groups or subset g
11 months ago ATpoint ★ 4.1k
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Answer: Answer: mia package installation has non-zero exit status
11 months ago ATpoint ★ 4.1k
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Answer: Answer: DESeq2 how to extract expression values corresponding to log2FoldChange
11 months ago ATpoint ★ 4.1k
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573
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Answer: Answer: Individual DESeq2 runs versus a single DESeq2 run with contrasts produce differe
11 months ago ATpoint ★ 4.1k
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Answer: Answer: Several questions about the workflow using DESeq2 to process RNA data
11 months ago ATpoint ★ 4.1k
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Answer: Answer: DESeq2 on multilevel design variable
11 months ago ATpoint ★ 4.1k
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1.0k
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Answer: Answer: Handling NA's in Deseq2
11 months ago ATpoint ★ 4.1k
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760
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Answer: Answer: Remove duplicate genera in DEseq output?
11 months ago ATpoint ★ 4.1k
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599
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Answer: Answer: Normalized counts from LRT or Wald test?
11 months ago ATpoint ★ 4.1k
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613
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Answer: Answer: DESeq2 or edgeR for Presence and Absence of Proteins
11 months ago ATpoint ★ 4.1k
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545
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Answer: Answer: DoparParam() execution fails when foreach() works
11 months ago ATpoint ★ 4.1k
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874
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Answer: Answer: Nanostring data differential expression analysis: limma or DESeq2?
12 months ago ATpoint ★ 4.1k
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Answer: Answer: how to solve this error
12 months ago ATpoint ★ 4.1k
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Answer: Answer: Subsetting DESeq data set to compare treatments within one group (multi-group ex
12 months ago ATpoint ★ 4.1k
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Answer: Answer: Docker usage with Trio Bioconductor Package
12 months ago ATpoint ★ 4.1k
393 results • Page 3 of 8
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