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Comment: Comment: Extract LRT results for each comparison
7 months ago ATpoint ★ 4.2k
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1
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363
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
7 months ago ATpoint ★ 4.2k
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Comment: Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
8 months ago ATpoint ★ 4.2k
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2
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674
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Comment: Comment: DataFrame Construction With Non-standard Column
8 months ago ATpoint ★ 4.2k
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1
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674
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Comment: Comment: DataFrame Construction With Non-standard Column
8 months ago ATpoint ★ 4.2k
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391
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Comment: Comment: TxDb.Dmelanogaster.UCSC.dm3.ensGene
8 months ago ATpoint ★ 4.2k
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471
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
8 months ago ATpoint ★ 4.2k
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906
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Comment: Comment: Getting batch corrected counts after RUVSeq
8 months ago ATpoint ★ 4.2k
1
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583
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
8 months ago ATpoint ★ 4.2k
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906
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Comment: Comment: Getting batch corrected counts after RUVSeq
8 months ago ATpoint ★ 4.2k
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556
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Comment: Comment: AAbin vs DNAbin structures
8 months ago ATpoint ★ 4.2k
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1.2k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
8 months ago ATpoint ★ 4.2k
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1.6k
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Comment: Comment: PCA percent variance DESeq2
8 months ago ATpoint ★ 4.2k
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3.0k
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Comment: Comment: Protein differential Expression analysis
9 months ago ATpoint ★ 4.2k
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1.6k
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Comment: Comment: PCA percent variance DESeq2
9 months ago ATpoint ★ 4.2k
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982
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
9 months ago ATpoint ★ 4.2k
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982
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
9 months ago ATpoint ★ 4.2k
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1
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1.4k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
9 months ago ATpoint ★ 4.2k
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1.4k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
9 months ago ATpoint ★ 4.2k
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1
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800
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
9 months ago ATpoint ★ 4.2k
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2
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1.5k
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Comment: Comment: can't open mghp.osn.xsede.org
9 months ago ATpoint ★ 4.2k
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1.2k
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Comment: Comment: bulk RNA-seq analysis using R : batch effect : One question concerning Combat-se
9 months ago ATpoint ★ 4.2k
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899
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Comment: Comment: lfcShrink() and batch effects in DESeq2
9 months ago ATpoint ★ 4.2k
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1.0k
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Comment: Comment: Difference between DESeqDataSetFromMatrix() function and DESeq() function
9 months ago ATpoint ★ 4.2k
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729
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Comment: Comment: insufficient unique points for computing knee/inflection points
9 months ago ATpoint ★ 4.2k
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729
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Comment: Comment: insufficient unique points for computing knee/inflection points
9 months ago ATpoint ★ 4.2k
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1
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801
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
9 months ago ATpoint ★ 4.2k
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604
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Comment: Comment: DESeq differential expression results are too stringet. How to relax my criteria
9 months ago ATpoint ★ 4.2k
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1
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1.1k
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Comment: Comment: Same few genes repeated in DESeq2 Results
10 months ago ATpoint ★ 4.2k
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1
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1.1k
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Comment: Comment: Same few genes repeated in DESeq2 Results
10 months ago ATpoint ★ 4.2k
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2
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848
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Comment: Comment: DESeq2 analysis
10 months ago ATpoint ★ 4.2k
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780
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
10 months ago ATpoint ★ 4.2k
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1
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1.4k
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Comment: Comment: RNA seq differential expression analysis for large sample size
10 months ago ATpoint ★ 4.2k
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3.3k
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Comment: Comment: diffbind
10 months ago ATpoint ★ 4.2k
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547
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Comment: Comment: I changed the reference in DGE contrasts by DESeq2, but the results changed just
10 months ago ATpoint ★ 4.2k
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1.0k
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Comment: Comment: Reading data into chromVAR
10 months ago ATpoint ★ 4.2k
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597
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Comment: Comment: Pairwise comparison for DEG analysis
10 months ago ATpoint ★ 4.2k
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677
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Comment: Comment: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
10 months ago ATpoint ★ 4.2k
1
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0
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807
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Comment: Comment: Identify highly variable genes after vst
10 months ago ATpoint ★ 4.2k
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1.0k
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Comment: Comment: how to remove batch effects of RNA seq data based on continuous variables(like s
10 months ago ATpoint ★ 4.2k
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1.2k
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Comment: Comment: PCA for QC should include subset of top variable genes or full set of genes in R
10 months ago ATpoint ★ 4.2k
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2
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841
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Comment: Comment: DESeq2 design formula
10 months ago ATpoint ★ 4.2k
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624
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Comment: Comment: Normalization of different input materials
10 months ago ATpoint ★ 4.2k
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1.5k
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Comment: Comment: Choosing between VST and rlog for PCA for outlier identification in DESeq2 when
10 months ago ATpoint ★ 4.2k
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1
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1.5k
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Comment: Comment: Choosing between VST and rlog for PCA for outlier identification in DESeq2 when
11 months ago ATpoint ★ 4.2k
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1
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733
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Comment: Comment: fastMNN reproducibility across machines when using Docker
11 months ago ATpoint ★ 4.2k
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658
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Comment: Comment: DESeq2 package unrecognized after downloading latest version of R: keep getting
11 months ago ATpoint ★ 4.2k
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624
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Comment: Comment: 'Killed' error during RNAseq alignment
11 months ago ATpoint ★ 4.2k
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725
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Comment: Comment: Get Intron Seq
11 months ago ATpoint ★ 4.2k
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1
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801
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Comment: Comment: DESeq2 with nbinomGLM issues
11 months ago ATpoint ★ 4.2k
507 results • Page 3 of 11
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