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Answer: Answer: MA plot for DESEq2 analysis
6 months ago ATpoint ★ 4.2k
1
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359
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Answer: Answer: DESeqResults object -> extract statistics results with rownames (gene)
6 months ago ATpoint ★ 4.2k
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Comment: Comment: Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu
6 months ago ATpoint ★ 4.2k
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1
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538
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Answer: Answer: DESeq2: FPMs varying based on sample groups used
6 months ago ATpoint ★ 4.2k
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850
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
6 months ago ATpoint ★ 4.2k
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3
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1.2k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
6 months ago ATpoint ★ 4.2k
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2
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708
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Comment: Comment: Mfuzz package loading issues
6 months ago ATpoint ★ 4.2k
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1.2k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
7 months ago ATpoint ★ 4.2k
0
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1
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507
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Comment: Comment: can't update bioconductor 3.18
7 months ago ATpoint ★ 4.2k
0
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1
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935
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Answer: Answer: DESeq2 Normalization with 4 Groups
7 months ago ATpoint ★ 4.2k
1
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0
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987
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Comment: Comment: [Bug] Segfault in edgeR::cpm
7 months ago ATpoint ★ 4.2k
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691
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Answer: Answer: choosing rank for GSEA
7 months ago ATpoint ★ 4.2k
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546
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Comment: Comment: Duplicated expression values?
7 months ago ATpoint ★ 4.2k
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1
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615
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Answer: Answer: Using dplyr commands with DataFrame objects
7 months ago ATpoint ★ 4.2k
0
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513
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Answer: Answer: Differential Expression Cutoffs for n = 1
7 months ago ATpoint ★ 4.2k
0
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0
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488
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Comment: Comment: edgeR: Time course RNA-seq experiments
7 months ago ATpoint ★ 4.2k
2
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2
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929
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Answer: Answer: DESeq2: Design model includes sex but only one female
7 months ago ATpoint ★ 4.2k
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728
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Comment: Comment: limma: More differentially expressed genes when factor included in model than wh
7 months ago ATpoint ★ 4.2k
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555
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Answer: Answer: scRNA analysis : DEG between low and high-expressing cells
7 months ago ATpoint ★ 4.2k
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407
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Comment: Comment: Extract LRT results for each comparison
7 months ago ATpoint ★ 4.2k
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2
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805
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Answer: Answer: Biostrings error at retrieving protein sequences
7 months ago ATpoint ★ 4.2k
0
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1
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407
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Answer: Answer: Extract LRT results for each comparison
7 months ago ATpoint ★ 4.2k
4
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1
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819
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Answer: Answer: ComBat_seq function in sva package does not return a matrix
8 months ago ATpoint ★ 4.2k
0
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1
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364
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
8 months ago ATpoint ★ 4.2k
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478
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Answer: Answer: Batch effect adjust in model matrix
8 months ago ATpoint ★ 4.2k
0
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0
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707
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Comment: Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
8 months ago ATpoint ★ 4.2k
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2
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680
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Comment: Comment: DataFrame Construction With Non-standard Column
8 months ago ATpoint ★ 4.2k
0
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1
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526
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Answer: Answer: DeSeq2 design fails (full model matrix is less than full rank)
8 months ago ATpoint ★ 4.2k
0
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345
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Answer: Answer: Adding chromosome numbers to the respective gene ids of DESeq2 output file
8 months ago ATpoint ★ 4.2k
0
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1
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680
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Comment: Comment: DataFrame Construction With Non-standard Column
8 months ago ATpoint ★ 4.2k
0
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0
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394
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Comment: Comment: TxDb.Dmelanogaster.UCSC.dm3.ensGene
8 months ago ATpoint ★ 4.2k
1
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2
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1.3k
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Answer: Answer: Differential expression analysis with only FPKM matrix available from total newb
8 months ago ATpoint ★ 4.2k
0
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0
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473
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
8 months ago ATpoint ★ 4.2k
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0
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1.1k
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Answer: Answer: Software Compatibility Issue Between phyloseq and lme4 Packages
8 months ago ATpoint ★ 4.2k
0
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5
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12k
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Answer: Answer: SingleR Label.Ont
8 months ago ATpoint ★ 4.2k
1
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0
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1.8k
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Answer: Answer: TPM from STAR mapped counts
8 months ago ATpoint ★ 4.2k
0
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0
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318
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Answer: Answer: Missing genes in the differentially expressed gene list which otherwise are expe
8 months ago ATpoint ★ 4.2k
1
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0
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913
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Comment: Comment: Getting batch corrected counts after RUVSeq
8 months ago ATpoint ★ 4.2k
1
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0
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586
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
8 months ago ATpoint ★ 4.2k
1
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1
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913
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Comment: Comment: Getting batch corrected counts after RUVSeq
8 months ago ATpoint ★ 4.2k
1
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1
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913
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Answer: Answer: Getting batch corrected counts after RUVSeq
8 months ago ATpoint ★ 4.2k
0
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0
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320
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
8 months ago ATpoint ★ 4.2k
1
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0
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483
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Answer: Answer: bulk RNA-Seq batch correction
8 months ago ATpoint ★ 4.2k
0
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1
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560
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Comment: Comment: AAbin vs DNAbin structures
8 months ago ATpoint ★ 4.2k
0
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1
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1.0k
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Answer: Answer: MACS2 not installing
8 months ago ATpoint ★ 4.2k
0
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1
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704
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
8 months ago ATpoint ★ 4.2k
0
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0
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1.2k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
8 months ago ATpoint ★ 4.2k
0
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0
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520
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
8 months ago ATpoint ★ 4.2k
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1.6k
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Comment: Comment: PCA percent variance DESeq2
9 months ago ATpoint ★ 4.2k
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1
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1.5k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
9 months ago ATpoint ★ 4.2k
924 results • Page 4 of 19
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