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1
vote
0
replies
1.0k
views
Answer:
A: Remove any rows with 0 count in S4
6.8 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.6k
views
Comment:
A: Differential expression analysis error
updated 6.8 years ago by
Gordon Smyth
53k • written 6.8 years ago by
swbarnes2
★ 1.4k
0
votes
1
reply
750
views
DESeq2 on mixed species samples
deseq2
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
swbarnes2
★ 1.4k
0
votes
0
replies
50k
views
Answer:
A: What is colData? How do I make one?
7.0 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.1k
views
Comment:
C: importing Tximport to DESeq2 for a time series experiment
7.0 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
views
Answer:
A: DESeq2 Multi-Sample Test
7.0 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
3.0k
views
Comment:
C: Differentiating between batch and treatment effects in edgeR, DESeq2
7.1 years ago
swbarnes2
★ 1.4k
0
votes
2
replies
1.3k
views
Answer:
A: DESeq2 memory allocation question
7.1 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.7k
views
Comment:
C: Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
7.1 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.7k
views
Comment:
C: Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
7.1 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.6k
views
Answer:
A: deseq2 analysis multiple factor and 4 different time points
7.1 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
841
views
Multiple tissue types in one DESeq2 object
deseq2
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
swbarnes2
★ 1.4k
2
votes
2
replies
5.0k
views
Answer:
A: Why does biomart work on humans and not mouse genes for HGNC symbol conversion?
7.2 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
868
views
Comment:
C: Strange results from Deseq2
7.3 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
868
views
Comment:
C: Strange results from Deseq2
7.3 years ago
swbarnes2
★ 1.4k
0
votes
4
replies
868
views
Strange results from Deseq2
deseq2
7.3 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.3k
views
Answer:
A: 3x2 comparisons in DEseq - time (3 time points) and two treatments
7.4 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
8.0k
views
Answer:
A: Understanding Contrasts when analyzing DESeq2 results
7.4 years ago
swbarnes2
★ 1.4k
1
vote
0
replies
1.2k
views
Answer:
A: A DESeq2 problem in dealing with case-control study
7.4 years ago
swbarnes2
★ 1.4k
1
vote
1
reply
2.5k
views
Answer:
A: DESeq2 design formula - how to account for donor and /or sample?
7.5 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.9k
views
Answer:
A: colData and design problem
7.6 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
6.2k
views
Comment:
C: DESeq2 count normalization
7.7 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.3k
views
Comment:
C: How to handle strong batch effects
7.7 years ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.1k
views
Comment:
C: DESeq2 Control for differences between patients
7.7 years ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
views
Answer:
A: DESeq2 Control for differences between patients
7.7 years ago
swbarnes2
★ 1.4k
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