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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
2.0 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
2.1 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
2.1 years ago swbarnes2 ★ 1.4k
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
2.2 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 Normalization with 4 Groups
2.3 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Two factor design including interaction effect with DESeq2 in R
2.3 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Two factor design including interaction effect with DESeq2 in R
2.3 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2: Design model includes sex but only one female
2.3 years ago swbarnes2 ★ 1.4k
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918
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Comment: Comment: Issues with ddseq2 for treatment response factoring in different KO clones
2.3 years ago swbarnes2 ★ 1.4k
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987
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Answer: Answer: DeSeq2 data comparison and extracting outputs
2.3 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
2.4 years ago swbarnes2 ★ 1.4k
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Comment: Comment: How to use contrast with multiple treatments?
2.4 years ago swbarnes2 ★ 1.4k
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Answer: Answer: How to properly compare the group-specific samples using DEseq2
2.4 years ago swbarnes2 ★ 1.4k
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Comment: Comment: How to use contrast with multiple treatments?
2.4 years ago swbarnes2 ★ 1.4k
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2.1k
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Comment: Comment: Handle zero effective gene length when tximport RSEM results
2.4 years ago swbarnes2 ★ 1.4k
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Comment: Comment: PCA percent variance DESeq2
2.4 years ago swbarnes2 ★ 1.4k
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1.5k
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Answer: Answer: DESeq2 batch design
2.5 years ago swbarnes2 ★ 1.4k
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2.1k
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
2.5 years ago swbarnes2 ★ 1.4k
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3.5k
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Comment: Comment: PCA percent variance DESeq2
2.5 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
2.5 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
2.5 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 design formula
2.6 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 on multilevel design variable
2.7 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Error: biomaRt has encountered an unexpected server error.
2.7 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
2.7 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
2.7 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Accounting for technical replicates in DESeq2
2.7 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2 design formula
2.8 years ago swbarnes2 ★ 1.4k
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1.9k
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Answer: Answer: Combine RNA-seq
2.8 years ago swbarnes2 ★ 1.4k
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Answer: Answer: How to import dataset from other software into DESeq2?
2.8 years ago swbarnes2 ★ 1.4k
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720
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Answer: Answer: DESeq2 statistical model construction
2.8 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Compare and filter three BAM files
2.9 years ago swbarnes2 ★ 1.4k
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934
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Comment: Comment: DESeq2 with temporal data and different treatments
2.9 years ago swbarnes2 ★ 1.4k
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1.7k
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Comment: Comment: How do I design my DESEQ experiment?
2.9 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: How do I design my DESEQ experiment?
2.9 years ago swbarnes2 ★ 1.4k
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1.6k
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Answer: Answer: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
2.9 years ago swbarnes2 ★ 1.4k
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Answer: Answer: RNAseq high padj value from validated samples?
2.9 years ago swbarnes2 ★ 1.4k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
3.0 years ago swbarnes2 ★ 1.4k
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4.1k
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Answer: Answer: DESeq2 and heatmap for multiple comparisons
3.0 years ago swbarnes2 ★ 1.4k
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1.2k
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Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
3.0 years ago swbarnes2 ★ 1.4k
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1.6k
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
3.0 years ago swbarnes2 ★ 1.4k
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1.6k
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
3.0 years ago swbarnes2 ★ 1.4k
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1.6k
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Answer: Answer: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
3.1 years ago swbarnes2 ★ 1.4k
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1.5k
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Comment: Comment: Gene TPM validity with STAR only quantification
3.1 years ago swbarnes2 ★ 1.4k
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1.6k
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Answer: Answer: DESeq2: overlap differentially expressed genes with and without interaction term
3.1 years ago swbarnes2 ★ 1.4k
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Answer: Answer: running DESeq2 from nanopore wf-alignment workflow
3.1 years ago swbarnes2 ★ 1.4k
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1.4k
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Answer: Answer: Results analysis of differential gene expression using DESeq2 package
3.2 years ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: what could be the source of this erro
3.2 years ago swbarnes2 ★ 1.4k
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1.2k
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Comment: Comment: what could be the source of this erro
3.2 years ago swbarnes2 ★ 1.4k
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1.3k
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Answer: Answer: How to filter for counts in different columns
3.2 years ago swbarnes2 ★ 1.4k
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