Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
920
views
Comment: Comment: checkFullRank(modelMatrix) while neither factor can be predicted from each other
3.2 years ago swbarnes2 ★ 1.4k
2
votes
0
replies
1.5k
views
Comment: Comment: Rlog performed on tpm or raw transcript abundances?
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
4.1k
views
Comment: Comment: FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-pr
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.3k
views
Comment: Comment: countToFPKM and featureLength
3.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.3k
views
Comment: Comment: countToFPKM and featureLength
3.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.3k
views
Comment: Comment: countToFPKM and featureLength
3.2 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.0k
views
Answer: Answer: DESeq2 on multiple sample groups
3.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.3k
views
Comment: Comment: countToFPKM and featureLength
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.9k
views
Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.9k
views
Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
3.2 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
3.3k
views
Answer: Answer: countToFPKM and featureLength
3.2 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
2.3k
views
Answer: Answer: DESeq2 false positive result?
3.3 years ago • updated 3.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Comment: Comment: Remove low-expressed genes in DESeq2?
3.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
563
views
Answer: Answer: DESeq2 effect of interaction when using a grouping variable
3.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Comment: Comment: DESeq2 says my sampleinfo has linear combination error but I don't see it...
3.3 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.2k
views
Answer: Answer: DESeq2 says my sampleinfo has linear combination error but I don't see it...
3.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.4k
views
Answer: Answer: Error in DESeqDataSetFromHTSeqCount
3.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
839
views
Answer: Answer: Analysing only significant genes from differential expression analysis in a repl
3.3 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Answer: Answer: DESeq2 correction for biological replicate variance using design
3.3 years ago swbarnes2 ★ 1.4k
0
votes
2
replies
2.6k
views
Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
3.3 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.5k
views
Answer: Answer: plotCounts to visualize variations of a specific genes along conditions
updated 3.3 years ago by 43k • written 3.3 years ago by ★ 1.4k
0
votes
1
reply
1.7k
views
Comment: Comment: RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
3.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
4.0k
views
Comment: Comment: t.test to determine the P-value in DESeq2
3.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Answer: Answer: Design formula with batch effects DESeq2 "Not full rank matrix" error.
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.8k
views
Comment: Comment: disappearing of DEGs genes by adjusting P-value < 0.05
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
4.0k
views
Comment: Comment: t.test to determine the P-value in DESeq2
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
4.0k
views
Comment: Comment: t.test to determine the P-value in DESeq2
3.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
3.2k
views
Answer: Answer: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
3.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.4k
views
Comment: Comment: How to sort SAM file
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.8k
views
Answer: Answer: disappearing of DEGs genes by adjusting P-value < 0.05
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Comment: Comment: Running DESeq2 on viral infection without control/host data
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Answer: Answer: Running DESeq2 on viral infection without control/host data
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
984
views
Answer: Answer: RNA-seq DESeq2 factor design
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Answer: Answer: Unexpectedly low number of DE genes?
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Comment: Comment: I have a problem when I run DESeq2 with one variable with 8 levels, I can't find
3.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.3k
views
Answer: Answer: Modelling batch effect in DESeq2 - how to interpret the results?
3.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.4k
views
Comment: Comment: How to sort SAM file
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.4k
views
Answer: Answer: Comparing different method for DESEQ2
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.1k
views
Answer: Answer: No differentially expressed genes after DESeq
3.4 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
3.4k
views
Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.4k
views
Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
7.0k
views
Comment: Comment: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
3.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
7.0k
views
Answer: Answer: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
3.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
923
views
Answer: Answer: interaction term formula for DESEQ2?
3.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.0k
views
Answer: Answer: Clarification about DESeq2 counts() function when dealing with covariates
3.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
750
views
Answer: Answer: DESeq2 with incorrect adjusted Pvalues
3.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: Overwhelmed by DESEq2 options and how to answer my questions.: Two conditions an
3.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
730
views
Answer: Answer: ref treatment
3.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: code syntax for DESeq2 to derive DEGs from a complicated contrast or interactio
3.5 years ago swbarnes2 ★ 1.4k
2
votes
0
replies
5.8k
views
Answer: Answer: Understanding how to contrast two treatments in DESeq2
3.5 years ago swbarnes2 ★ 1.4k
475 results • Page 3 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6