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Comment: Comment: Using the correct counts with lm function linear model
4.9 years ago swbarnes2 ★ 1.4k
2
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Answer: Answer: Design formula for pairwise comparison of experimental setup with multiple facto
4.9 years ago swbarnes2 ★ 1.4k
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Answer: Answer: Compining DESeq2 output with biomart query to display DE genes rather than DE en
5.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: R package to change protein *.msf file to any readable file
5.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Limma: Differential expression with two batch effects , location and batch.
5.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Compare 3 RNASeq groups with no control in DESeq2
5.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 interaction study
5.0 years ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2 interaction study
5.0 years ago swbarnes2 ★ 1.4k
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744
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Answer: Answer: What defines a batch in DESeq2 analysis
5.0 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: Answer: How to prepare a file to DESeq2 analysis?
5.0 years ago swbarnes2 ★ 1.4k
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4.5k
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Answer: Answer: Extracting Sequences from Fasta Files with Rsamtools
5.0 years ago swbarnes2 ★ 1.4k
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Comment: Comment: Using DESeq with 2 assays having 2 conditions
5.0 years ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: Using DESeq with 2 assays having 2 conditions
5.0 years ago swbarnes2 ★ 1.4k
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1
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9.1k
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Answer: Answer: DESeq2 - Error: full model matrix is less than full rank
5.1 years ago swbarnes2 ★ 1.4k
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1.8k
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Comment: C: Extracting coordinates of points in an image
5.1 years ago swbarnes2 ★ 1.4k
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1
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1.8k
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Answer: A: how to deal with differential analysis between 3 groups in DESeq2?
5.1 years ago swbarnes2 ★ 1.4k
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652
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DESeq on tissue mixing experiment
deseq2
updated 5.1 years ago by 43k • written 5.1 years ago by ★ 1.4k
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1.8k
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Comment: C: How can I combine results tables into a single output?
5.1 years ago swbarnes2 ★ 1.4k
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6.2k
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Comment: C: How to add pseudocount to DESeq2 dds object
5.2 years ago swbarnes2 ★ 1.4k
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1
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6.2k
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Answer: A: How to add pseudocount to DESeq2 dds object
5.2 years ago swbarnes2 ★ 1.4k
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3.9k
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Comment: C: DESeq2 Installation Errors
5.2 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: C: Picking the right design formula
5.2 years ago swbarnes2 ★ 1.4k
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7.9k
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Comment: C: How to use RSEM value to find differentially expressed genes
5.2 years ago swbarnes2 ★ 1.4k
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1.2k
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Comment: C: DESeq2 reporting >10,000 DEGs
5.2 years ago swbarnes2 ★ 1.4k
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1.2k
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Comment: C: DESeq2 reporting >10,000 DEGs
5.2 years ago swbarnes2 ★ 1.4k
4
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2.5k
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Answer: A: how to understand DESeq2 results comparison
5.2 years ago swbarnes2 ★ 1.4k
2
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4.2k
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Comment: C: How to incorporate batch effect that is only present in one level into the desig
5.2 years ago swbarnes2 ★ 1.4k
0
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1
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3.1k
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Comment: C: Error Message in DESEQ (DESEQDataSetFromMatrix)
5.3 years ago swbarnes2 ★ 1.4k
1
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2
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1.5k
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Answer: A: DESeq2 res remove some genes
5.3 years ago swbarnes2 ★ 1.4k
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4.9k
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Answer: A: Dealing with multi-overlapping and multi-mapping reads
5.3 years ago swbarnes2 ★ 1.4k
0
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1
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3.5k
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Comment: C: Convert mouse gene ids to hamster gene ids
5.3 years ago swbarnes2 ★ 1.4k
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1
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730
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Comment: C: Two data set: Control sample is one data set and Case is another data with Time-
5.4 years ago swbarnes2 ★ 1.4k
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1.7k
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Answer: A: Custom Functional for automated DESeq2 running
5.4 years ago swbarnes2 ★ 1.4k
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1
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2.9k
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Comment: C: Filter Out Low Read Counts
5.4 years ago swbarnes2 ★ 1.4k
1
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0
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815
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Answer: A: size factor not 1
5.4 years ago swbarnes2 ★ 1.4k
0
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784
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Comment: C: How to treat genes in RNAseq analyses
5.5 years ago swbarnes2 ★ 1.4k
0
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4
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1.6k
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Answer: A: To start organising data for DESeq2
5.5 years ago swbarnes2 ★ 1.4k
0
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1
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1.1k
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Answer: A: Extraction of individual results from DESeq2 data
5.5 years ago swbarnes2 ★ 1.4k
0
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1
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2.0k
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Comment: C: Nested design matrix in edgeR
5.5 years ago swbarnes2 ★ 1.4k
0
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0
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3.4k
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Comment: C: Peer's Certificate issuer is not recognized
5.5 years ago swbarnes2 ★ 1.4k
1
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0
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737
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Comment: C: DESEQ2 error after adding batch in design
5.5 years ago swbarnes2 ★ 1.4k
0
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1
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2.0k
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Answer: A: Incomplete Install of Bioconductor Packages
5.5 years ago swbarnes2 ★ 1.4k
0
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3
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21k
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Comment: C: having trouble formatting data for DE analysis
5.6 years ago swbarnes2 ★ 1.4k
0
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1
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952
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Answer: A: Problem with batches and "Model matrix not full rank" during differential gene e
5.6 years ago swbarnes2 ★ 1.4k
1
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1
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1.2k
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Answer: A: Time-series analysis with control and treated samples, and Fold Change extractio
5.6 years ago swbarnes2 ★ 1.4k
0
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1
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2.3k
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Answer: A: Data Structure for Read Count Analysis by DESeq2
5.6 years ago swbarnes2 ★ 1.4k
2
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2
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14k
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Answer: A: DESeq2 vs edagR Result analysis
5.6 years ago swbarnes2 ★ 1.4k
1
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0
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695
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Answer: A: The query to the BioMart webservice returned an invalid result: biomaRt expected
5.6 years ago swbarnes2 ★ 1.4k
0
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1
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3.6k
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Answer: A: How to use DESeqDataSetFromHTSeqCount
5.6 years ago swbarnes2 ★ 1.4k
0
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0
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814
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Answer: C: DESeq2 - why genes with very large variance between reps show up as significantl
5.6 years ago swbarnes2 ★ 1.4k
475 results • Page 7 of 10
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