Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
1.6k
views
Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
14 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
2.1k
views
Answer: Answer: DESeq2 and heatmap for multiple comparisons
15 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
567
views
Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
15 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
925
views
Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
15 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
925
views
Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
15 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
925
views
Answer: Answer: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
15 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
857
views
Comment: Comment: Gene TPM validity with STAR only quantification
16 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
916
views
Answer: Answer: DESeq2: overlap differentially expressed genes with and without interaction term
16 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
1.1k
views
Answer: Answer: running DESeq2 from nanopore wf-alignment workflow
16 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
694
views
Answer: Answer: Results analysis of differential gene expression using DESeq2 package
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
723
views
Comment: Comment: what could be the source of this erro
17 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
723
views
Comment: Comment: what could be the source of this erro
17 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
736
views
Answer: Answer: How to filter for counts in different columns
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
510
views
Comment: Comment: checkFullRank(modelMatrix) while neither factor can be predicted from each other
17 months ago swbarnes2 ★ 1.3k
2
votes
0
replies
976
views
Comment: Comment: Rlog performed on tpm or raw transcript abundances?
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
2.0k
views
Comment: Comment: FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-pr
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
2.0k
views
Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
2.0k
views
Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
2.0k
views
Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
1
vote
1
reply
557
views
Answer: Answer: DESeq2 on multiple sample groups
17 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
2.0k
views
Comment: Comment: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
1.9k
views
Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
1.9k
views
Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
17 months ago swbarnes2 ★ 1.3k
1
vote
1
reply
2.0k
views
Answer: Answer: countToFPKM and featureLength
17 months ago swbarnes2 ★ 1.3k
2
votes
1
reply
1.6k
views
Answer: Answer: DESeq2 false positive result?
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
842
views
Comment: Comment: Remove low-expressed genes in DESeq2?
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
317
views
Answer: Answer: DESeq2 effect of interaction when using a grouping variable
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
711
views
Comment: Comment: DESeq2 says my sampleinfo has linear combination error but I don't see it...
17 months ago swbarnes2 ★ 1.3k
1
vote
1
reply
711
views
Answer: Answer: DESeq2 says my sampleinfo has linear combination error but I don't see it...
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
716
views
Answer: Answer: Error in DESeqDataSetFromHTSeqCount
17 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
563
views
Answer: Answer: Analysing only significant genes from differential expression analysis in a repl
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
700
views
Answer: Answer: DESeq2 correction for biological replicate variance using design
18 months ago swbarnes2 ★ 1.3k
0
votes
2
replies
1.3k
views
Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
1.6k
views
Answer: Answer: plotCounts to visualize variations of a specific genes along conditions
updated 18 months ago by 41k • written 18 months ago by ★ 1.3k
0
votes
1
reply
809
views
Comment: Comment: RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
18 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
2.1k
views
Comment: Comment: t.test to determine the P-value in DESeq2
18 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
891
views
Answer: Answer: Design formula with batch effects DESeq2 "Not full rank matrix" error.
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
987
views
Comment: Comment: disappearing of DEGs genes by adjusting P-value < 0.05
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
2.1k
views
Comment: Comment: t.test to determine the P-value in DESeq2
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
2.1k
views
Comment: Comment: t.test to determine the P-value in DESeq2
18 months ago swbarnes2 ★ 1.3k
1
vote
1
reply
1.6k
views
Answer: Answer: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
18 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
1.8k
views
Comment: Comment: How to sort SAM file
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
987
views
Answer: Answer: disappearing of DEGs genes by adjusting P-value < 0.05
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
778
views
Comment: Comment: Running DESeq2 on viral infection without control/host data
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
778
views
Answer: Answer: Running DESeq2 on viral infection without control/host data
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
588
views
Answer: Answer: RNA-seq DESeq2 factor design
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
801
views
Answer: Answer: Unexpectedly low number of DE genes?
18 months ago swbarnes2 ★ 1.3k
0
votes
1
reply
838
views
Comment: Comment: I have a problem when I run DESeq2 with one variable with 8 levels, I can't find
18 months ago swbarnes2 ★ 1.3k
1
vote
1
reply
791
views
Answer: Answer: Modelling batch effect in DESeq2 - how to interpret the results?
19 months ago swbarnes2 ★ 1.3k
0
votes
0
replies
1.8k
views
Comment: Comment: How to sort SAM file
19 months ago swbarnes2 ★ 1.3k
439 results • Page 2 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6